RnoINT0096306 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55359456-55361901:+
Coord C1 exon
chr10:55359456-55359629
Coord A exon
chr10:55359630-55361727
Coord C2 exon
chr10:55361728-55361901
Length
2098 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCACTGCCTTTCATTCTCAGGCC
3' ss Score
10.31
Exon sequences
Seq C1 exon
CTGAACTCCTTTGAACAACTATGCATCAACTACACCAATGAGAAGCTGCAGCAGCTGTTCAACCACACCATGTTCATCCTGGAGCAGGAGGAGTACCAGCGAGAGGGCATCGAGTGGAACTTCATCGACTTTGGTCTCGACTTGCAGCCCTGCATCGACCTGATAGAGAGACCT
Seq A exon
GTGAGTGCCTCCTCCTTGCCCGGCTTCCTCTTCTGTTGAGCAGAGCCTTTAGTTTTCTTTCTGGCACAATCTGAGGCACAGTCCAGGAAAATGATATTCTAATAACACGATCTACATAAGTAAAAGCGAGTGATCTGGCAGTCAAAGCCTTCATTAGGTCTCCTCAGGTGCAGCTTTGAATCCCTGTCCTTGTGTTTGTGCATGTGTCAGGTAATGTGCCTTGGTCCTCACAGACCACAGAGACCAGTGAGATGGTAGCACTGTGTGTACCCCTCAAAGGGGGTGTGGCACTCCACTTGGCACACCTCCTTCCTAGGTAATACAGGAACACTTCTCTGAGAATAAGATGTGTCACATAAACTTAGTTTTTAGGTAATTGAATTTGAGCTCAGCCTTTTGTAAGTATTTTTTGTTTTTGAAGTATGTTTGAGAGGGCATTCTTTTGGCAAATATACATTTAAAGACACATGATGTGGGATAGTTGACAGCTTAGCTCCGCCAAGACAGGGTAAGCTAGTCCTTCACAATAATTCCTGCCTCACTTAAGGTTTGTCAGATGGTTCTAGGCCAGAAGGCTGGAGACAGATGCTGTGAAGGGAGTGAGAGAATGTTCTAGGGCGGGATTTGTAATCCTGTGATCCTGCCTCAGAAGCATTAACTCCCTTCCACTCTAACTCCAACACAGTAGCCTGCCGCTGTGACCATGGCTCCACCATGGCTCCTCCGGAGGTAGCCAACCTTGGACAATATGGATTATCCTCTCTAACTGATCTGAAACCCGAGGGTTTTGAGAAGGAACCAAGGGGTAAGGGTCTCGCTGTAGAAGTGATCCTAGGTCCCATGCACCGTGCGCTCCAGTCAGCTCTGCTTGGGACTGTCACCATCACATTTCTTTATTCATGCTATAATCCCTACTTGCCTTTCACATAGCATCTTCACCCAGTAAATACTTGAAAAAAATTGTTTCTAAAGGTTTAAGAATGAGTCAGAGTGTGAGTTCAGTGTCATGTCACATGCTGGCACTGTAGCGGTAAACAGTGACCTGGAAGCACTACCCAGGAGCCCATTGCTCTCTAAATACTTTATTTCAGTTCCCAAGTCATCCAAGGGAATGGCATGCTGTAGGTCTTTAATTTTTTTTAATTCACAACATAAATGAACCTGTTAAGACTGGAATTTAGTTTTGTGCTATATCATACCTTGGGAGGCCATCCCCACTAATACTTCGTTTTCCTCACCCCTGCCCCACTAAAATCCTGGCAAGGCGCGGCTGATGTGCCTTCTGTCTCTAGATTTGTCAAAGCCTTTTAAAGTGATAGCTGTGTTACCCCCTTTCATAATTTATTAGTCACTTTTCTGTTGCTGCGATAGAACCATATGACTTCTAGGAAGAAGGGTTTAACTTAGGTTCAGGGATCCAGAGGGAGGAGAGGCCACTGAGGCAGGTGATTTTGGCGCATGGCAACAGTCATGGTGGCAGGAACAATTGAGAGTGAGCCAAGAATGGCGTTGTGTGGCTTTGAAACCTCAAGTGCTGCCAACAAGGCCATGCTCCCCCAACGGCACCAGCTAGGGACGGATTATTCACAGGCCAGACTCTGCGGACATTTCTCCTTAAACAAGCACACCGTGCTGCTTCAGACACTTCACCAACAAGAAATTACACAGTCTCTTTAGTCATCAGTTAACAAAGCCCTGAACTGCAGCATGCAGCGTCTGGTCAGCTGAGCTTTATATATCTCCAGCAGCCGTTGATCATAGAAAACTAACTTTGACCCCTCCACCCCATTCCCTCCCCCAGCTCCTTTCTGGCTCCTGAATTGGATGATTTGTGGAGAGTCTGCTATAATTAGTGTACTTATAATGTGCATATTTCAAGTTTCCAGGGCTTATCCGATGTTATCCATTTCTTCCCTGTTCTTAGTAACTTATGATCTGTGTTTGAACTTTTAGCTTGTTATGGCTTGGACATACTTTCCATTGGAGAAGGTGGTTCTCTCCTAGATCTTCATGGAGCTGTTAGTTGTGGAAGTAAACTGTCAATCACCCCGGTGGTGCCACTGCTAACTTGCTGGTCCTCACTGCCTTTCATTCTCAG
Seq C2 exon
GCCAATCCCCCTGGTGTGCTGGCCCTCCTGGATGAAGAATGCTGGTTCCCCAAAGCCACAGACAAAACGTTTGTTGAGAAGCTGGTTCAGGAGCAAGGTTCCCACTCCAAGTTTCAGAAACCACGGCAACTGAAAGACAAAGCCGACTTCTGCATCATCCACTATGCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]