RnoINT0096372 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:851119-852238:+
Coord C1 exon
chr10:851119-851242
Coord A exon
chr10:851243-852029
Coord C2 exon
chr10:852030-852238
Length
787 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGGCCATTCCTCTTCCCCAGGCT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GAATACACTGCAGGATGAGAAGCGCCGCCTGGAGGCAAGGATCGCCCAGCTGGAGGAGGAGCTGGAGGAAGAGCAGGGCAACATGGAGGCCATGAGTGACAGAGTCCGCAAGGCCACATTGCAG
Seq A exon
GTAGGAGATACTGAGGTTGGGGTGAAGGGATAGAGAGGGAACACGTACTCAAGCCATTTAAGTTAACACAGAGGGTTCAGGAAATAGCCTGGCCCTGCCTGGGACTCTACCCTTTTAGCTCTGGGTGGTTGCTTCTGCCCTACACAGTGGCTTTCAGTCTCTGGACTCAAAATAATAGATCATCTGAGGGCTATATTGAGGCAAGATCACTTGGCCATATTCTCCACACTGGAGGGGCAGAGTGCCTTGGGTTTCCCAAAACAGGAGCTAGGTGCAGCCCAGCATTGGCTACGTAGTATGTACCACAAGTATGCTATAAGGCACAGGGTCCTTACTCCTTGTCCATGTGTGTCATGCCTGCATCTGCCTGTGGTTGTCAGAAAACAGACCTGTAGGGTTTTCTGTGAGGCAGCATCATCTTGCTTGCTCTACCACATGGCCATGGTGAATGGCTCTGGTGTTTTCCTTCACTGCTCTTTGCCCAATCCCAAGAATCCTTGGTGCCACTTTGGAATAGAAGCTTCCTGAACATCTCTGTGATGGGTGCCAGGAACCATCCTGTAGCCCCTCAGGGTCTGGGCTAGGGAGCATGGGCAGAACAGAACAGGTTTCTGTCTTGGTCTAGGTGACACAGGAGGCTTCTGAGCTGAGTCTGGAGGCGACAAAGAATGAGTAGAAAGAGAGAGAAGAAGCAGATGCTCTGGCCTTAGGGAATAATGGTGGTAGACTTGTTCTGATACCCACCCAGTTGTATGCCTTCCGCCTCATGGCCATTCCTCTTCCCCAG
Seq C2 exon
GCTGAGCAACTGAGCAATGAGCTGGTCACTGAGCGCAGTGCAGCTCAGAAGAATGAGAGTGCACGGCAACAGCTGGAGCGCCAGAACAAGGAACTCCGAAGCAAGTTGCAGGAGGTAGAAGGTGCTGTCAAAGCCAAGCTTAAGTCCACTGTTGCGGCACTAGAGGCCAAGATTGTGCAGCTGGAGGAGCAGATTGAACAAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.489
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACTGCAGGATGAGAAGCG
R:
TGGCCTCTTGTTCAATCTGCT
Band lengths:
329-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]