RnoINT0099454 @ rn6
Intron Retention
Gene
ENSRNOG00000000854 | Ncr3
Description
natural cytotoxicity triggering receptor 3 [Source:RGD Symbol;Acc:727881]
Coordinates
chr20:5175417-5175773:+
Coord C1 exon
chr20:5175417-5175548
Coord A exon
chr20:5175549-5175658
Coord C2 exon
chr20:5175659-5175773
Length
110 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCCCTGCTATTCCTCCCCAGGTC
3' ss Score
11.63
Exon sequences
Seq C1 exon
AGCCTCCTCAACAAGCCTCCAACGCAGAGCCAGAGCGAGCTGCCTACACAAGTCTCCTCCTTCGCGCTGGCGTCTATGCCCTCAGCTTTCTCTCTGTGGCCACCGGCAGTGTCATCTATTACCAGGGCAAAT
Seq A exon
GTGAGTTGCTGAGCAGGGGCATGGGAACAGAGAAGGGAGGGACGGACTGCAAGAGGAGAGAGCTTCGGGCTGTAACTCTGAGCAGCCCCTCCCCTGCTATTCCTCCCCAG
Seq C2 exon
GTCTCTGTCACGTGGGAAACACCGCCACTCCTCCCACAGCCTCTGAGGAGCGATTCTAAATCCCAAAGATCCAGCACTCAAAGAGGCCGGCAATAAATCCTTACATTTTCTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000854:ENSRNOT00000001139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAACAAGCCTCCAAC
R:
CGAGAAAATGTAAGGATTTATTGCCG
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]