RnoINT0099860 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37666813-37667327:-
Coord C1 exon
chr3:37667235-37667327
Coord A exon
chr3:37666906-37667234
Coord C2 exon
chr3:37666813-37666905
Length
329 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTT
5' ss Score
4.52
3' ss Seq
GATACTCTTGGCTCTCCTAGGTA
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTGCTATACAAAGAGAACCTGGGGAAAGCAACCCCCACACCCTTCACTCCTGAGATGGAAAGAGTCAAACGCAATCAAGAAAACTTTAGCTCG
Seq A exon
GTATTTGAGAGAAAAAATAAACCATTAAAATTCTAACAAGCCTGATCATCATGGCTACACCACTAATTCTTCTCACAGCATTTCCAAGACTTGATACCTTTTCAAACTCTTCCTTGGCCACTTAAAAACAACCACCCACCCTTGCTAGTTCGCACTGAGTTCAAGTCTTATCTCTCGCTTTCTACTGTAACAATTTCATGGCTTTCTCCTCCTGAAGTGTTTCTTATACTGTGTGACCTAATTGGGCCATAATGATAGCTGGATGATGACTTCTTAGAACTGTTTTCTTCCTTTGCTTTCTGATGTTGGGATACTCTTGGCTCTCCTAG
Seq C2 exon
GTATTGTACAAAGAGAACATGAGAAAAGCAACACCAACACCTGTCACTCCAGACATGGAGAGAGCCAAACGCAACCAAGAAAATATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:107
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATACAAAGAGAACCTGGGGA
R:
CGAGCTAATATTTTCTTGGTTGCGT
Band lengths:
185-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]