RnoINT0100572 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257461130-257465160:-
Coord C1 exon
chr2:257464972-257465160
Coord A exon
chr2:257461328-257464971
Coord C2 exon
chr2:257461130-257461327
Length
3644 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TAAATATTTATTTTAAATAGGTA
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATG
Seq A exon
GTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTAAGCCAGGAGAAGCATGGTAAGACAGAGGCTAACAGGAGTCTGCAGTCAGCAGTGTACAGTGTGTGCGCTTGCCCAAGCTATGAAAAGCCAGACATCTTGGGTGTCATTCTCAGGAATGCTGTCCTTTTTTGTGACAGGACTGGCTAGCAGTCTGAGAAATCTTCCCGTCTCTGCCTCCACTGTACTGAGATTACAGGTGTGTACCTAGTTTTCCTTGGGCTTTGGGGACTGAACTCAGGTCCTCATGCTTTCAAGACAAAGACTTAATAAGCTATCAAACCTAGCCCAAAGATTCGGTCTTTCAAACATGTGAATCAAATGACTAGACTCTGAGGAGGACGGCCATCCTGTCATCTCTGGAATCTGTAGCAAAGAGTATGAATGCCAAATATCAGGTCCTTTCAGCATTTGCTTCAGTTGGTATTGAAAGAGATTTGATTACCAATGCCATGCCTGGCATAAAAGGTTGGAAGTTATCATCCTTCTCTAGAAAGATACATTTTCTTTCTTTTAGGCCAGCTCTGAGTGTCAAGAACAAAATGGGATTTCCCCTAACATTTCCCTCCATCATTCCATTCTCTTCTCCTGTCCTTTTCGCCTTCATTCTTGCCATTTTAATCCCACTCTATATTAGATCATCAAAGTCATTTAATCATAATTATCTAACTTCAAAATATCCATCATTCTCTTACATATTGATACCTAGTTTGTCAAAAAGTTAAAACTTTCCATACCATGTTAATGTTTGTAAAATAGGTATTTGAACAGTCAATTTTAAGTAATTTAACATATGCAAACTGTATCCCTTTTTTTGCATTTTAATTGCCTTCTGATAAAATAGCCTAGTATTTGTTCCTGCCTGTCCTGGGTATTCTGCCAAGGACTTGGTTTAATCACTCGTCCATACACGCAAATCAGAAACTCAGAAGCCTGAAACATATTCCTTCAACTTTTCATTCATGCCTAACTGGTTATAAACTCCCATTTATTTGATTCCCCCTGACTTATTCTCCCATCTTCACTACTGTAGTCTGTTGCTAATCCTTGCCTGGGACCAAGTCCTAACTTGCTTGCTGTCTTGCCAGTGAGCCCAGGAGAGATCCTCTCACTCCCTGTCCATGTCTGCAGGCCACAGGTCAGATCTGAACAGAAGTATCTATCTCCAGGACACAGAAAAACAGAACTAAATTGTTTTTCGTGGTAAAATGGATCAGACAACAGCTTCCAAGCAATTCTGAGATTGCTTGTATTCAGGAGGTAGTCAAATAATAAAGCTGTTATTGGAGACTGGGAAGATGGCTCAGCTAGCTAAAGATACCACCACTGAGCCTGATGGCCTAAGCTCACTCCTGGAAACCAACCTGGTAGGAAGAACAAACTGACTCCTGAAAAATTTCTTCTGACACCAACCTGCCCCACCCCACCCACAATAAATAAGACAGATAAACATTTTTTAAAGTTTAAACCCTACAGTTGGGAGCCTACCTCAATATTAGACAATGCACTTAGTGTTTCCAAACTTCATTTAATCCTGTGAGAATAATAAAATTGTCAAAGGGAGGCTCAAGAGAGGTAAGGAGCTTGCCCATGGTCACAATCAAATTAATTATTCATATAAATTTACAAAATTACAAAAAGCAGTGTTAATTATTCACATTTCTAATCTCTTGTACCATATAAAGTAATAGATTTCACTCTTGACACTTTCCCACATGTATAGCATTATTTATAATCTTATTGGAAATATTCTAAAGCTTGACTTCTGGCTTTGCTACCTTGAAAAGTTACTTTTCTGTCAGTTTCTCCAGTTTCTCATGTGTAAACCAAGGGTATTAATTCTAAGCTGTTTTATAAGGTTACTGGATTAGTTGTATTTATAACTGGACTGGTTTTTAATTTTTTTTTATGTAAGCCTTTTTCTTTTAATTTCTTTTCTGCTTCAACATTCCCCTTTCCCTCTGCACCCAGTTACCCAGAAAAGCCAGGACTGGGCACTTAAACAAGAGACCTTAAAAAGTCAAGGCAAGCCAGCCCAAGATCAGCAGCCTCCCTCCAACAGGCCCCAGAGTCTAGATGCTAGTGTCTCCACTCAGAGCCTGGTAGTAAAAGCTGGTGCAGAATAAGGTAGTTCCAGAAGCTAGCAGCAACCCTGCCCAGACAGGTTTTCTGCAAATAGGGTACCCCTAACAGGGCCAGGCTGTGCAAAAAGTGGTGTTTGTTGGCCTTGTCAAAGAGCTCCTTCCCGTAGGCATCCGGAAACTGTGCGCCGTGTGTCCTGTAGGTGGCCAAACTCAAGGCCCCAGCTCCGGACAAGGCACCTAGGCGGCGGAAAGCAGCGCCTACCCCAGCCATAGCTGTGGGTGGTGGACTGGTAATTTTAAGAATATACGAACTATTATGTCTTTAAAACATCTTGGCAGCAAAACTGCACCATAAAATTATGGCATTAAGGTACTTTTTTTTTTCCGATAAAAGCTTAAGATGGTACACATGTAACTCATTAAGACTATGATTTAACTGAAATGTTTTATTTTAGTGAACAGAATTGGAGATTCACTTCAATCCAACAAATATATATATATATATATATATATATATATATGTATATATATATATATTTAAACCCTTTTAAAAATATTTATTACTTATTATTTATGAGTACAGTATAGCTGTCCTCAGACACACCAGAAGGAGGGTATCAGATCTCATTACAGATGGTTGTGAACCACCATGTGGCTGCTGGGATTTGAACTCAGGACCTCCGGAAGAGCAGTCAGTGCTTTAACCGCTGAGCCATCCCTCCGCCCCCCCCCCCAAATATTTTAAACATTAAAGAACATCAGTTTCTAATTCCAGTGGCTCATTGTGTAACAGTAGAGCATATTTATGAGTACAGTATAGCTGTCCTCAGACACACCAGAAGGAGGGTATCAGATCTCATTACAGATGGTTGTGAACCACCATGTGGCTGCTGGGATTTGAACTCAGGACCTCCGGAAGAGCAGTCAGTGCTTTAACCGCTGAGCCATCCCTCCGCCCCCCCCCCCAAATATTTTAAACATTAAAGAACATCAGTTTCTAATTCCAGTGGCTCATTGTGTAACAGTAGAGCATATTTTGCTCATTTCAATAGAGAATTGTACTGGTTACCATCCTTCATACCACACAGCCTTACATTTTTGATAATGTTCCCTTATTCATTGATTTGTGAAAGTTTATGATCTCTGAAGTTTTAGATTAGCATGAAACTTTTATTCAATAAATCTGTTTCTGTAAGAAATACCTTTTTAGTATGTACAATTCTGGGGAAAAAAGGTAAATATTTATTTTAAATAG
Seq C2 exon
GTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]