BtaINT0101226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67011126-67019517:-
Coord C1 exon
chr3:67019329-67019517
Coord A exon
chr3:67011324-67019328
Coord C2 exon
chr3:67011126-67011323
Length
8005 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
AAAAGAATTATTTTAAATAGGTA
3' ss Score
3.68
Exon sequences
Seq C1 exon
GTAAATGAAGAGGAGGAAAACCAAGACACAGAAAACATTTTTAAAGGGTACCGCCCTGGTAAACTCAAGCTCAGTTTTGAAGAAATAGAAAGACAAAGGAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGATGCCAGAAGAAGAATAGAGGAAGAAAAGAAGGCATTCGCTGAAGCAAGGAGAAGCATG
Seq A exon
GTAAGACAGAATGTGGCTGCAGGCGGCCACTGGGATTCAGCTTTTTAGAGTATGTTAGGAGAAAGCATTCAACTGTGGGGAATACCCTATTATTTCTGGAAGTTGTGCCAAAAGTAGGGATGGCATATAAGTTTTTAAAAGTCTCCTGTCATAATACCATCAGTTAAAGATCAGCTTCAGTATCATGTTGAAAAGGTTCTGATTAAATTGCTCTGCCTAGTATATATTATCTTCCTTCTCTGAGAAGGTGTGTTTTTTAGAACTAAGTATCTAAGCTAGGAGGGAGGGGGGTTCCTACCCCCACTTTCCCTTCCATTCTCTCCATTCTCTTCTCCCTAGCCACATTTCCTCCTTCCCTTCCTCACTCCTCCTTCCTTCCCTCCTTTCTTTCCAAGTTCCATCCCATCAGGATACATTAAATGACCAAAGCCATTTAACCACAATTATTTAACTCTCCAAAATGCTTATCATCACTCTGGATATTGCTACCCAACTTAACTCTGCTATAAAATTATACTTCTTATACCATTTTAATGTTTGTAAATATACAATTATCTGACAAACTCTATTTTTAAGTACATTGACATGTAAATGCTGCACAACCTTCTTGAAACATTTTCATTCGCTTCAGTCATATCACGACCTGATTTTCTTCCTCTATGTCTGGGTGAGCTTCAGACACACATTCCAAGTGTTTTTTTTTTTGGCCTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGCACTCATCTCACATGCTAGCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCTTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGAGGTGGCTAAGAGTTGGACACAACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAACGGCAACCCACTCCAGCATTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTAGTAACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGTGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGATCATTATCCACACAGACACTTAAATGAGTCCTGAGAACCTTAAGCAGTTCCACCTCTCATTTGTGCCTCATATCCAATCACTCACTAAGTCTCACTTCCTATATATCACTATTAAAATTCCCCTATTTCCCACTGTTGTTCAGTTGCTGTTATGTCTGACTCATTGCGACTCTGGACTGTAGCACGCCAGCCTTCCCTACCCTTCACCATCTCCCAGAGTTTGCTTAGATTCATGTCCATTGAGTCAGTGATGCTGTCTAACCATCTCATCCTCTGCCGCCCTCTTCTCCTCCTTTTGACTTCAATCTTTCCCAGAACTTCCTACTGCTACAACTATAATGCAGGTCACTGTTACCCGTTGCCTCAGGCCAACTCCTAATAATTTGCTTTGTTGCCTATAATCTATTCTTTCCTATAAAGCCAGGAAAGAAAGAAAGAAAGTGAAGTCGCTCAGTTGTGTCTGGCTCATTGCAACCCCTGGACTGTAGCCTGCCAGGATTCTCCGTCCATGGGATTTTCCAGGCAAGAATACTGCAGTGGGTTGCCATTTCCTTCTCCAGGAGATCTTCCTGACCAAGGGATTGAACCCAGGTCTCCCACACTGCAGGCAGAGTCTTTACCGTCTGAGCCACCAGGGAAGCCCATAATGCCAGGAGAGTTCTCCTGATGAAACAATGGACGGAGGTTCATAACATTGTACAGGAGACAGGGATCAAGACCATCCCCAAGAAAAAGAAATGCAAAAAAGCAAATTGGCTGCCTGAGGAGGCCTTACAAATAGCTGTGAAAACAAGAGAAGCAAAAAGCAAAGAAGAAAAGGTAAGATATACCCATTTGAATGCAGAGTTCCAAAGAATAGTGAGGAGAGATAAGAAAGCCTTCCTCAGTGATCAGTGCAAAGAAGCAGAGGAAAACAATAGGATGGGAAAGACGAGAGATCGCTTCAAGAAAATTAAAGATACCAAGGGAACATTTCATGCAAATATGGGCTCAATAAAGGACAGAAATGGTAGGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAACTGTACAAAAAAGATCTTCATGACCCAGATAATCACAATGGGGTGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGCGGGCCTTAGGAAGCATCACTATGAACAAAGCTAGTGGACATGATGGAATTCCCGTTGAGCTATTTCAAAGCCTAGAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCAAATTTCTAAAACTCAGCAGTGACCACAAGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTATTGCACAATTGCATTCATCTTACACACTAGTAAAGTAATGCTGAAAATTCTCCAAGCCAGGCTTCAACAGTACGTGAACTGTGAACTTCTAGATGTTCAAGCTGAATTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTATAGGATCATCAAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCCTTATTGATTATGCCAAAGCCTTTGACTGTGTGGATCACAAAAAACTGGAAAATTCTTCAAGAGATGGGCATACCAGACCACCTGACCTGCCTCTTGGGAAATCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAGGAGTACATCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTTTATGCACAGTACATCATGTGAAATGCTGGGCTGGATGAAGCACAAGCTGGAATCAAGATTGCCAGGAGAAATATCAATAACCTCAGATATGCAGATGACAACACCCTTATGGCAGAAAGGGAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAACTCAACATTCAAAAGACTAAGATCATGGCATCAAGTCCCATCACTTCATGGCAGATAGATGCGGAAACAGGGGAATCAGTGCCAGACTTTATTTTGGGGGGCTCCAAAATCACTGCAAATGGTGACCACAACCATGAAATTAAAAGATGCTTACTCCTTGGCAGGAAATTTATGACCAACCTAGACAGCATATTAAAAACCAGAGATGTTACTTTGTCAGCTATGGTTTTTCCATTAGTCATGTATGGATGCAAAAGTTGGACTGTAAAGAAAGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTTCAAGGAGATCCACCCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAGTATTTTGGCCACCTGATGCAAAGAGCTGACTCATTTGGAAAGACCCTGTTGCTGAGAAAGATTGAAGGTGGGAGAAGACGGGGACGACAGAGGATGAGATGGTTATATGGCATCACCGACACGATGGACATGAGTTTGTGTAAACTCTGGGAGTTGGTGATGGACAGGAGGCCTGGTGTGCTGCATGCAGTCCATGGGGTCGAAAGAGTCAGACACGACTGAGCAACTGAACTGAACTGTTCTTTTTTTTAAAAAAAAAGTGAATTTGATTGTTACTACTTTGCTTAAAAATTTTCTACTTCCATTAAAGCAAAAATCCAAACACTACAATTTTAAAACAAATTTCTTTACAATCTTGCCCTAGTATTTTCTCATTTCATTTCTTGATTCTTGGTTAATCTGCCATGTTTGTTCCAGACATAGTAAATTTCTTTCCATTTCTTCAAAATGCTATGCTCTGATCTCTGGAACTTCATAAATACTGTATGAAACACGTTATCCCTCTCCTTTCCCTGTGCTCTGCTCTCTCCTATTAGTATATTCCATTTCCTCTGGAAGCCTTTCCTGATAGTGCAAGTTCCAGAAAGGGTTCCTTTCATGTACTCTTAAAGCATTTTGTGTTCCCCCAGTGTAGCAGTAGTGCTGTTTTCTTGTTGCTTATGACTGTCTTCCTCACTCAGTGAGGCTGAGACCACATTGAGTACGTGGCATGATGCATTCTAGTGTAACAAACTTCCTAAAATGCTTGTGGAATAAGTGATATTAAAACTATTTTATGTATATTATTAGGTAATCCTTGATTCACAAATGGTTTCTACACAGAAACCCTACAAAATTCTGAAAGCACTTAATTTTTAGAGAACAAGCTGGTTCAGAACCGCTAGATGAGAAGTAGCTGTGGAGATTAAGAAATCTAGTCCTGGGGCAGATTTTTAGGCCAAATCTGTCTTTTATCATGATGTACTAGTGAGAAAAGTGCAGGGTTAGGGTTAGGGTTAGGTGCAGGGAAAACTAGTGTCCTAGAGACATTTCTGTACTAGGAACAAGAAACTTTTCCCTTCCTTTATGTGGTTTTCTTATCTAGGACCAAGTATTGTCATTTCATTGTTCTTGTTCAGTCGCCCAAGTCGTGTCTGACTCTACGACCCCATGGACTGCAGCACGCCAGGTCTCCCTGTCCCTCACCATCTCCAGGAGTTTGCCCAAGTTCATGTTCATTGCATCGGTGATGCCATCCAGCCATCTCATCCTCTGATGCCCTCTTCTCCTTCTACCCTCAATCTTTCCCAGCATCAGGGACTTTTCCAATGAGTCATCTGTTCGGATTAGATGACCAAAATACTGGAGCTTCAGCTTCAGCATCAGTCCATATTATAGCTCAAGTAGCTCATATATTATTTAAAAATTTGGGGGGTAATATGTGGATTGTAAAACTATATAAATGTTGTTTCTGAGCTGCACTGGTTTTGTGGTAAAGCCTGTCATTTATAAAATTTGGAACAAATAAATAATTACCATTTGTTTTTCCTTATTCAAGTGTCTAGTTCAACCACAGGGACATAATTTAAATGAGAGGTTTATGTATGTACTTTCAGGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGGAGTCAGATACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGTAGCAGTAGCAGTTCGGGGAATATAATTAGGTAATTTCTTGTTATCCAAAGTGTATTGCAAGTCAATGACTTAAAAGCAGAGTTGTTATTTGCAGTTTAGAGACTACCGGTATACAATGATATTGTAATAATAAAACTGCTATTTGGTAGCTTATCTTGGTGTCAGGCACACTGCAGAGTGTTTCCAAACTTTATGTGATTCTCATGACAATTCAATGAAAGTTGTTGCAGATAGGGAAATTCAGATCTAAAGAGGCTATGTAACTTGTCCGCGGTTGCAACTAAATCGCAATTAAATGGCAGTTAGACATGTAATTTATAAAATTATGAAAAGGTAGTCTAAATAGTTATTTACAATTTTATTAGACTTCTAAAGTTTTGGATCTCACCTTTTCCATATAGTATTTGTATTGACTTTGGACAAGTTAACTTTTTATTGCCTTAGTTTCCTCATGTGTTAAATGGGGATATTAACAACACCTACTTCATATGGGTATAGAAAAATAAGTCAATGCATGTAAAATGCTTAGAAGTATTCTTGGCAGTTGTTAAGTATTAACTATTATTTATTTTTAATTAGCCTGACAGGAAATAAATCAATATAATAAAATCACAGCATTAAGTGATTATTGCCCAATTATGAAGGGATCATAATGATAACTCATTCAGTTAAAACCATGATTTAACTGAAACGCTCTATTTTAATTACCAGAATTGAGGTTCATTTTACTTTTTAAAAAGTAAATTATTTTTTAATTTTTAAAAAATTTATTTGTCCAGAGAAAAGAATTTTCTTCTTATCAGGCAAGTAGTAAACAGTTTGGTCTGAGAGCAGAGAGTTTCAAAGTACAAGATCTTCCGTGTTGACGCTGGCATCTGCAGACTGATCATCTTCCTGTTCTCCTACCTAGGACCGAGGAGAGGAGCAGTTCAGTTTACCGAACTAGGGCAAATTACCAAACTCGAAGCTTGTTTTCCTTAATGGGCTACTGAGAAATGTGGTGTCCCCTGTGAACCTCCTGTCACTTCTCGGGGGAACGGTGCTCAGCATGGCGTGCAGGCATCTTTGCTATTTATCGCTACGTCTCAGTGGCTCCTGGTTCCATTTTCCCCTCTTTTATTACTTTAGAACAAGTTTGCTGGTAGTCTTGAATGCAATATTTGTTTATTCCAAAAGATCATATTTATAATAAAATCATTGTAGAAGGAAAAAAAAAATTTATTTGTTTGACTGTGCCAAGAGCTAGTTAGGGCATGTGAGATCTTTGATCTTTGTTGTAGCATGTGTGATTTTAGTTATGGCATATGGGATCTAGTTCCCTGACCACGAATCAAACCTAGGTAGGCCCCCCACATTGGGAGCATGGAGTCCCAGCCACTGAACCACCAGGGAAGTCCTGAGGTTCATTTTAATCCAATTAAAAAGTTTTCCCAATATTAGAACATCTTTTAAATTTTTTTAATGAAAATTTTTGTTGTTGCTAGAGCATCTTAATGTCTAATTCAAATTGTGTGCTCGGTCTCTCAGCTGTGTCCGACTCTTTGTGATGCTGTGGACTGTAGCCTGCCAGGCTCCTCTGTCCGTGGGAGTCTCCAGGCGAGAATACTGGAGTGAGTTGCCATTTCCTCCTCCAGGGGTCTTCCCCATCCAGGGGATTGAACCATCATCTCTTGCATCTCCCGCATTGGCAGGTGGATTCTTTTACCACTGTGCCACTGGTAAAGGAAGCCCCTAATTCAAATTACTCATAGTAAAAGTCAAAGTATTTATTTGTGTTCATTGGAATGGAGACTAGATGGTCACCATTTTCTCTGTTACTACAAATACTTTAGTCTTATGTTTTCTAATAATTATTCCTTGTTTTATATTTTTAAAGAGAATTTTTGGTTTTTAGTCAATGTGAAATCTTTCTATTCAAGAGATATTCCCTTTTTACTATGTATAATTCTGGTAAAAGTGATAAAAGAATTATTTTAAATAG
Seq C2 exon
GTAGTAGATGATGACACCCCAGAGATGTATAAAACAATCTCTCAAGAATCTCTTATACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAGGAGCGGAAACATAAACTAGAGATGGAAAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]