RnoINT0100571 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257464972-257467078:-
Coord C1 exon
chr2:257466908-257467078
Coord A exon
chr2:257465161-257466907
Coord C2 exon
chr2:257464972-257465160
Length
1747 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
ATAAGTAGTTTCTTTATTAGGTA
3' ss Score
2.72
Exon sequences
Seq C1 exon
GATGATGAAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATG
Seq A exon
GCAAGTGTATACATGCTACCCTTGCCTTATGGGAGAGGCAGCCAGTTCTGCATGGCGTCCTGCAGATCCATGGAGGAGGAGGGCTCTCTAAATGGGGAACCTCATTTCATTGTTTTATTTTCATAGTACTATGGATCGGACCTAGTACATACTAAACAAGTGCACTACCACTGATACCATTCAAGCCCCGGAAGGCATGTTTTGAAACTGTATATATTTATATACAATATATTTACAATTCGCTTGTATTTTTTTTTTTGAGTTTTAACTTTGGGGCATGTTGTCCAATATGCTTTGAATTTTTTATTTTACTATTATATACTATGTTAATATAAAAATATTCCTCAATGCATGTTTTTTCTTTTTGTGTAAGTTAAACAGTATATTTAATGATATGTTGTGGGACATTTTCAAGTCAAATTATGAATTTCACTTGAGGAGCACAGGTCTACAGTTTCAGCTCCTTAGGGGGCTGAGGAGGGAAGAACACACACTCAAGGCTAGCCTGTACTACAGACTCAGAGGAAAAGGCCAACCTGGGCAATACCCTTATACTCCGTGATAGAGCACTTGTCTAGCATCCACAAGGCCCGAGGCTTAATCCCCACTAATCCCTATTATTATAAAAAGAAAAAAAAGCACAGATGTCAGTCTCATTTTGAAAATTTAAAAATGAACAGCTATAATTTTCAAAGTTACCATGACCTTCTTGATTAGCTTTCATTAATAATGTTATGAAGATTGCAGCTTAACATTTTGAATTCTCCAGACATTATTTAAAATGTTATTACTTCTGGCTGGGTATGGTGGTGCATGCCTTTAATCTCAGCATTTGAGAGGTAGAGGCAGGCAGGTCTCTGAGTTCTAGGCCAGCCTGGTCTGTATGGGAAGACTGTCTCAGAAACAAATGAAATGTTATTCGCTTTTAAGTAACACCTGCACGTTTTACTATAATGGGCAAGCAGCCCAGTAAGATGTTAGCAAAAGGTTTCAATTCATACTTAGGTGAGCAAATAAACTGCGAAATGAATTTTATATAAATATCAGATGGCAGGCAGGCTTTTATCTGATTAGTATAAGGAAAATCACCCTAGTTCATAATGAAGAAACATTTTTTTTTTTAAAGTTGAGTCAAGGTGTTGCTATAGATTTGGCTGGGCTGGAACTTCCTATGTAAACTAGACTGGCCTTGAATTACACAGCTCCTCTTACCTCTGCAGGTGCACACTACCACACCTGGCAGGAAAATGCTTACAGATCACCATCGTCTCGCCCTCTCCAGACTGTGTGTGTACACCTGAGCTCTAAGTACAAACCATTTAGTTTATGAGAATAAACAGTCAGCATGAGCCCTTTAAAATTTGACTTGTTTAAAAGCTAGACTGAGAAATTTTATTTAATCTTGAGTACATTTTTATTTGTAACTTCTCTACATATGGTCATTTTATATATAGGATATTAAAAAAGAGGATTTGGCCAGGCATGGGAGGCAGAGTCAGTCAGATCTCTGAGTTCAAGGCCAGCCAGGTCTACACAGTGAGTTTCAAGACAGCCAGGGCTATTATTTTAGAGAGACTCTGCCTCAAAAACCAAAGATAAAAATTAAAAGTAAAAAGGAATTGGAGTAAGTATTCTGGGAGCTTTGAAATACTATTCTGTCCAGTTGCTAACCACATGCCTTTCTACTGGTAATCCATTCCTGGGCCAAAGAATCTCAATGATTAGTAATAAGTAGTTTCTTTATTAG
Seq C2 exon
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGAAACAGAGGCCAAAA
R:
GCTTCTCCTGGCTTCAGCAAA
Band lengths:
357-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]