GgaINT0037487 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19626326-19629162:-
Coord C1 exon
chr8:19628989-19629162
Coord A exon
chr8:19626512-19628988
Coord C2 exon
chr8:19626326-19626511
Length
2477 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTCTCCATTTTCTGTAAAGATA
3' ss Score
5.75
Exon sequences
Seq C1 exon
GGTGAAAATCAGGACAGTGAAACACAGTCGTCTCTGTCTCCTGGTAAGCTGAAAGTAACTTTTGAAGAACTTGAAAGACAAAGACAGGAAAACCAAAGGCGGCAAGCAGAGGTAGAAGCAAAACAGCGCTTAGAAGAGGAAAAACGTGCCTTTGAAGAAGCTAGACAGCAAATG
Seq A exon
GTAAGTGCATGTTTTGTGCATGTTGCTATAGAATTTTGATAGAGGATATGCCTTTACATTCACTCCTGAACCTGATTCTTATTGCTTAGCTGAAGATTCTGTCACTGCTAAGTTTTGAAATAGGTGCTTCTCATCTTGGTTCTAACTCACTAACTGTATAGGCATAAGTCTCTTATTTTAGTAAAAGGAGGAGATTTTGTGTTTTAAATTTGTTGTCAATGTTATCAATTTTCATATCTGCACTTTGTAGTACCTTAAGCTGTAGATCCTCAAGAAGAAAATTACTTTTCTGTTTTGAGCATGAAAAGTACTCCATATGTTTCAGTTAGCAATTTTTATGAAAGCATTCTGTAGTAGGAAAATGCTACTTCTTATTCCCACATTTATTTTATAAATACGATATAATGTGTTGTTTTTTTAAATTTGTTTTTATGAAGAAAAGGAAAGGTAGGTCGGCTGTCTTGCAGGTAGCAGCATAAATAACAATGTACTAGAAATTATGAGATTCAACACCACAATATCGCTCACAACTCCTGTTTTATATTATTTGCAAAACCATTTCCATTATCATGAGCCAAACTTATTTTAGTTCAGCTCACTATAGTTTGTTCTTCAATCACACTAGTGGAATCGTGCACTTAGTACTAGCATAAGAAACACAAGATACTCCAGTACTGTATTTCTTATTTTGCTATACTCTATTTGCAAAAGCTTTATTTTGAAGTTCTGTATTTAAGTATCCTTCCTCTATACAATCTCAAACATTGTGACTTTGTTCATTCATATACCAAGTTTAATGAGTCTTGTTTTTATCATATTTCATGAGAACTTTAAACGTATTATTTCTACGAGTTTGCTAATTTTAACTTTAAAAGAACAGTGTAAATATAAATTACCATTCTCGAACAAACAGGATCATTATATTGCCTATATTTCAAAAACAAATTGCTACTCAATGGAAAAACAAATCAAACCAAAAACCAGCACAACACAGAACCTCCAGAAAGCTGAATTTCTGAAATTCCCAATTGGTCCAAACGGGGAGGGTTCTGGGCTCAGGCAGATGCCAAAACTGAAGTTAATACCCCCCTCACTCCCACCTTTTGTCCTCCCTCTGCCCCTGAAAAAAATCACCTAACCATTCCGTAACAATAACCTTGGCATTATGTCAGTAACGCTCATTTTTTGTTTTTCTTTTGGAGTAAGGATATGAGTGAAAGAGAAAAGAAAATGAAGGAGTCTGTGAAGTCACTGTGACCATTCTAACTGAAGTTTTCTTCACATCTCCCACCCTTATATACCTACATTTACTAACCAAGTAATAAAAAAGTGTGACAATTGAATTTATAAATTCAAAAGAAGAACAAGTAGAAAAAGACCACAGGGCTGACTATGTGGTTATATCTGGTATCAGTGGTTGTCAAAATTTGGAGTAAAATGTTTCCTTAAAGGAAGAGTTCAGCAGTTCAATTCCTTCAATTCTTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTCCCTTATGAGTTCCAAATAAAAGACCTCTGTAATTCCCTCAGCTGTCTACCCAACATACCAGGCTTGCTTGCAGTCCGCAGATAGCTGGAGTATTAATACTCTTGACAGTTCCCAGTCAATTTCCACCATTAACAAATGAGGTACTCCATGATATGTTCTGAAGACGGTTCATTCTTTTGTTCTTCGTTGCAGTTTGCAAACAATGGGTTTCTCTTAGCAGATAATGTTTACTGGAGATAAGAAATAATGAATTATCTCACTTCCCTTTCTTCAGTGATGATTAAATGTCTAAAAAGAAGAGAAACAAAAATGTCAGTCTGGATTAATTAAAAATGTTAATTTAGTTTTGCTATAAAACTACAGCCTTCTTTTAAACTGCTAAGTGCATTGGTGATAACTCAGTCAATGGAAATGATGTGAAGAAAGTGAATAGGGAGTGCTTGTTTACAGGAAATAACCCAACCCTAAAACTATAAAATAGATACTAAATTGTTTATCCTTTTCCTGATAAGACATCCTGCTTCAAATTACACCTTGAAGTGATTTAAACAAATATAGAAGTTCAACATGGGATTCTGAAATACATTTCCTCTCTCTGCTGGTTAAAATGAAGTTCAAGAAGTTTCTTATAGGAACCAAATCATCCATATAGAATCATAGAATCCTTAGAGCTGGAAGGGGCCTCTGAAGGCCAACTAGTCCAATTTCCCTGCAATGAACAGGGACACCACAGCTACATCAGTCTGCCCAGGGCCTGATCCAGCCTCACCTTGAAATTCTCTATTCTTTCTCCAGGAGAAAAAAAGCAATTATAAAGGATCAGAAAGGAATTAATGGAGTATTTACTTACTATTCAGAATAGATACATTAAAAAAAAAACAAAAACCAAAAAACAACAACAAAAAACCAACTCTTATCCAAGTATTTTATATATTTTTTTTTCCTCTCCATTTTCTGTAAAG
Seq C2 exon
ATAAATGAAGGTGGCCATGAAGAATCTGAAAATTCTGGTAGAGAATTCCGTCCTGGTAAACTTAGGCTCAGTTTTGAGGAGATGGAAAGACTGAGGAGAGAAGAGGAAAAGAGGAGAGCAGAACAAGATGCAAGAAGACGCATAGAAGAAGAGAGAAGGGCGTTTGCTGAAGCACGGAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.823
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]