BtaINT0101225 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67019329-67021365:-
Coord C1 exon
chr3:67021189-67021365
Coord A exon
chr3:67019518-67021188
Coord C2 exon
chr3:67019329-67019517
Length
1671 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
CTGAGTTGTTTGTTGGTTAGGTA
3' ss Score
4.53
Exon sequences
Seq C1 exon
GATGATGAACTAGAAAGTGAGGCAAAAAAAGAATCACTTTCTTCTGGAAAATTGAAACTGACTTTTGAAGAATTGGAAAGACAAAGACAAGAAAACCGAAGGAAGCAAGCTGAGGAGGAAGCAAGAAAACGTTTAGAAGAAGAGAGGCGTGCTTTTGAAGAAGCAAGGCGGCAAATG
Seq A exon
GTAAAACAAACTGATGTATATGTAACATTTATATATGTGGATTATAATACATAATTATAAAATACATAATTATATATAATATATATTACAATATTATATAAATTATATGTATAATATTATAAAAATGTTATCTGTAAAGAATTCAATATTAAGGGAGGTAGCTGGATTTGGAAAGGTTCATTGCTATAAATTTAAGGAGATCTTCTATGTAGAAGGGTCTGATTTTGAAACTGTATATATATTCCATATATAACATGCATCCATATTATGTTCTAGTTTTCATTTTGGGATATTTTATCTAATATTCTCCAAGTTTTTATAAATTGTTATAAATATACAAAATATTTATTCAGCAGAATAATTATTCAACTCTTTGTTAGTTCAGTCTGCAGTGTGTTTAATAGCATGGTGCAGCACACTTTCAAGTCTAATCATAAGTATACACTTAGTGTCAATGTGTGTATACACACACACACACATAGTGAACATATACGTGTGTATAAATGTATACAATCTAAGTGGTTAAGAACATGGACTGTGGAGCCATACTGCCTGGATTCATACATCTAACATTTATTAAATGTGTATCCATGGACAAGTTATTTAACCTCTCTATACCTTTCCTCATTTGTAAAATGGTGAAAATAATTGGGCCTACTTCTTAAATCATTAAATGAGTTAACACAGAAAGCAAGGAGCATCTAGCATATAAGAAGTGCATTATTTTTAATTTATTTTTATTTTGCAATTTTTATTTTTTTGACCATGCAGTGGAGCTTGCAGGATCTTAGTTCCTTGACCAGGGATTGAACCTGTGCACCTTGCAATGGGAGTGCAGAATCCTAACCACTGGACCACCAGGGAACTCCCACTAAGCACTTTAAAATCATTAACTGCTATTATAGTAACAGATTTACCAACAAAAAAATAAAACTGAAATAAGAAAACACTGATTCCAAATTTCATTGCAAGAACCGAAGAATGGAACATATATAATTTTTTAATTTTTCAGACTTTCTTGATCAACTTTAAATAATGATGTTCTAAGGACTGTACCTCCAAAATTTTAATTTTCTATATATTTTGTTTGAAAATGTTGTTACTTTTGGGCAGTTATAGTTGGATATCTACACATTTTAGATATCACTGGTGGTCAATTTAGTGAAAAGACATAGTAATATCATTAATTAATTAAATCATAAATTTCAATGAGTATTTAATTAATTCATGTTATATTAGTTTTAATTATAAAATCATTAAATTTGAATTGTATATAAAATAGCTCCAGATATTTTACCCATTTAATTACCACAGTTCATAGTAAAAAAAAAATCCATGAAAATTACAGAATGACTTTATTATCTAAGAGACTGTGTGTGTATACTGTGTGTACATACACCCACTTTTAAATAACCCCTAATTTTTCCAGCTTAGATTTTTTGAATCATATTAGATTCATATTTTTGAATATTAGATTATTCTAGAATTAGAATATTAATCTAATATTAATTAGAGTATTAGAGGAAATATTAGATTCATATTTTTGAATCATATAAAGGAAGGAGATTTTGGTCCCCTATGTGAGGTGACTGAGTCTGTGCCTTTTGATTGATAATTCGTTCCTATCTTTGATGAATCTCAGTTCTTAATACTGAGTTGTTTGTTGGTTAG
Seq C2 exon
GTAAATGAAGAGGAGGAAAACCAAGACACAGAAAACATTTTTAAAGGGTACCGCCCTGGTAAACTCAAGCTCAGTTTTGAAGAAATAGAAAGACAAAGGAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGATGCCAGAAGAAGAATAGAGGAAGAAAAGAAGGCATTCGCTGAAGCAAGGAGAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAACTAGAAAGTGAGGCA
R:
TGCTTCAGCGAATGCCTTCTT
Band lengths:
352-2023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]