RnoINT0102971 @ rn6
Intron Retention
Gene
ENSRNOG00000050690 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:RGD Symbol;Acc:2318602]
Coordinates
chr8:64797958-64799098:-
Coord C1 exon
chr8:64798941-64799098
Coord A exon
chr8:64798132-64798940
Coord C2 exon
chr8:64797958-64798131
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TGTGCCCTCTCTGATTACAGGTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
CCGAAGAGAATATTGACGTCACCAGCAATGACCCCGAATTCCCCGCATCCCCCTGCAATCTGGATGGCATCCATGAGACATCAGCTCGCCTGCTCTTCATGGCCGTCAAATGGGCCAAAAACTTGCCTGTGTTCTCCAACCTGCCTTTCCGGGACCAG
Seq A exon
GTACACAACACAGCCTGCCTGCAGGAGCTGGGCCAGGCACAGTCAGCAGTCGGAGGTCAGCCAGCTTGGGGGAACATATACCCCTGGGCTGGTGAGGGATGGGAACTTACACAGTTTGGAAGGTGACCTTGGGGTACTTGTGTCTCTGAGCTGGGTATGGTTAGGGCAATGGCAGTGGGAATATGTAACTCTCTGAGGGAAGGATGCTAGCCAGAGATGCATAGAACCTGGAATGGCATGCAGAGTGGGGTGTATGGCTCTTTGGGTCCATTGCCTTTTCTTCTGTGCAAACTGTCTGGCCTGTAGGCATTCTGTGCCAGTGAGGCATCTGCATACCCAGAACAACAACCAAGTGGCTGACTGAGTTCTTTAGAGCACAGGCTTCCTATGAATTCAGGTCTGAGCGTCCCCTAGCCTTTCCACATCTGAAAAAGTGCTCTGAGCTTCTAGTAGGCTGGCAGAGATCTCACGGTGGTCCAGAAGAGAGTGGTGTGGCCGGCCAGAGGTTCTGAGCCCTCAGCAGGGCTTGGAGGGACAGCTTGGATGAGTCAGCCAGTCTTTTGAACTCTCTCAGTGTGATGCTCTCGGGCTCCTCCTGAGGCCGCCCAGCATCCCTAGGCTTATCTTGAATGGTCCAGCCACAGCTCTGGATTGAATCCATGGAGCTGAGCCAGAGCCAGTGTAGGCAGAGGTCAGGAGCGAAGCTATAGGCACCTGCGAGGGGCTCTTCTGCTCCTGGGGAAGGTGGCAGGCTGGGAGCACTGGGAGCTGTGCCCCTGTGCTGACACTTGTGCCCTCTCTGATTACAG
Seq C2 exon
GTGATCTTGCTGGAAGAGGCATGGAATGAGCTTTTCCTTCTTGGAGCCATTCAGTGGTCTCTGCCCCTGGACAGCTGCCCACTGCTGGCACCGCCCGAGGCCTCCAGCAGCTCTCAAGGCAGACTGGCCTTGGCCAGTGCAGAGATGCGCTTCCTGCAGGAAACTATCTCCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050690:ENSRNOT00000073122:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(31.4=90.6)
A:
NA
C2:
PF0010425=Hormone_recep=FE(37.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATATTGACGTCACCAGCA
R:
GCGGGAGATAGTTTCCTGCAG
Band lengths:
328-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]