BtaINT0103581 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18633218-18634497:+
Coord C1 exon
chr10:18633218-18633393
Coord A exon
chr10:18633394-18634250
Coord C2 exon
chr10:18634251-18634497
Length
857 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
ACCCCCCTCTCTGGGCACAGGTG
3' ss Score
9.58
Exon sequences
Seq C1 exon
CCGACGAGAATATCGATGTCACCAGCAATGATCCCGAGTTCCCCTCGTCCCCATACTCCTCCTCCTCTCCCTGTGCCCTGGACAGCATCCATGAGACGTCTGCTCGCCTGCTCTTCATGGCCGTCAAGTGGGCCAAGAACCTGCCAGTGTTCTCCAACCTGCCCTTCCGGGATCAG
Seq A exon
GTATACTCGTCAGGGGGGCTCACGAGTCAGCTGGGCTGGGGGCGCACACCTCCCTGTGCAGGTGATGATTGGAGGGGCACACAGCTTGGGGATGGTAAAGGCTGGAGACACGCGTGTCTCAGAGTCAGCGATGGTCATGGGCACATATCTCTGGGATATGGCAGTTGGGGTCATCACGTAGGGGACCCTGATGGCCAGGTATGCATGGGGACCAGACATTAGAAGGCAGTGTCTATGCCCCTCTGGGTCTTCTTTCCTCCTAGACAAACCCTCCGGCCTTAGATAGAGATGCTCTGTCTTTGTGTCACAGGGTGGTCTGCACACTGTGAACAGCATCAATGGGCAAATCTGGGCTCCCTTGGAACACAAATGCCCCCCTGACTTCTGGGTTTGAGTTTCAGCCCAGCCTCTTCATGCCTCTGGGCTTCTCATGAGCAAGGCGACCTGTCAGCATCCAGGAGGAGAGGCACGCTGAGCGCAGCAGTCCTTAGCCAGTGGTTTGGATGAAGCAGCTCAGAAGCGACTGAGTCTGCTGAGTATGGCCGACTTGGGATGCTGGTGGGGAGTGTCCCTGAGCTGCCCAGCTTCTCATGGCTCCAGGATTTGCCTGTGCTCCACCTCTACCTTTCGATGGAGCCCAGAGAATGTCTTAGAACTGAGGCATCTGGGCTGGATGGTGCCAAGACCCAGAGCTCCGAGCCCCTGGCTGATGTCAAGCAGAGGTCAGAATGTTCTGGGTACCTGGATCCAGCCCGTCCTCTCCTAAGACAGCTGAGAACGTGGCAGAGATTCCAGGCTGGGCCAGAGGAGCTGTGATCAGCCATCACACTTGCCCTCACCCCCCTCTCTGGGCACAG
Seq C2 exon
GTGATCCTGCTGGAAGAGGCGTGGAGTGAACTCTTCCTCCTTGGAGCCATCCAGTGGTCTCTGCCTCTGGACAATTGCCCACTGCTGGCCCTGCCCGAGGCCTCTGCTGGCGGCAGCTCTCAGGGCCGACTGGTGCTGGCCAGTGCGGAGACTCGAATCCTGCAGGAAACCATCTCACGGTTCCGGGCACTGGCAGTGGACCCCACGGAGTTCGCCTGCATGAAGGCCCTGGTCCTCTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236:ENSBTAT00000018926:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.5=81.4)
A:
NA
C2:
PF0010425=Hormone_recep=FE(40.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGCAATGATCCCGAG
R:
CGGAACCGTGAGATGGTTTCC
Band lengths:
344-1201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development