HsaINT1025285 @ hg38
Intron Retention
Gene
ENSG00000278570 | NR2E3
Description
nuclear receptor subfamily 2 group E member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
Coordinates
chr15:71812336-71813635:+
Coord C1 exon
chr15:71812336-71812511
Coord A exon
chr15:71812512-71813388
Coord C2 exon
chr15:71813389-71813635
Length
877 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GCACCCCTGTCTGAGCACAGGTG
3' ss Score
2.32
Exon sequences
Seq C1 exon
CTGATGAGAATATTGATGTCACCAGCAATGACCCTGAGTTCCCCTCCTCTCCATACTCCTCTTCCTCCCCCTGCGGCCTGGACAGCATCCATGAGACCTCGGCTCGCCTACTCTTCATGGCCGTCAAGTGGGCCAAGAACCTGCCTGTGTTCTCCAGCCTGCCCTTCCGGGATCAG
Seq A exon
GTACCTACCGGCCTGCCTGCTGGGGAGCTAGGCTGGGCTGGGGTCAGGCGGCCCACTCGAGTCAACCAGACAGGGCACACACATCCCCACGCCAGTATGAATGCACACAGCTTGGATGGTGATGGCTGGGGACACACATACCTCTGATTCAGCGATGGCTGGGGTGCATCTCAGGGATGGTGACGGTGGGGGTGCATGCATCTCTGGCACAGGGATGATGGTCGGGGTGCACACCTAGGAGATGATGATGGCTAGGGACCTACAGGGCCCAGGGTCTTCTTAAGTTCTGGAAGACCCTCAGGCCCTGCAGACATTCTGTGGGTAACAAGTGACCTGCACACCCTGAACAGGCTGAGTGGCTGACTCTAGGCCCCCTTGGAGCACAAGTGCCTACGACTTCAGGGCTTGCATTTTAGTTCAATCTCTCCAGCTCTGGGCCATCCCTCTCGGCTTCTAATGGGCAAGCAGATCTTTCAGGAAAACCAGGAGGAGAGGCATGAGGAGGGTTTGAGGCCCTCAGCCAGTCTGTGTGCTGGGGTGGAGCAACTCAGAAGAGTCAGGCCACACCACTTGAATACACTCAACTTAGGACACTCATGAGGCATGTCTCTGAGGCTGCCCAACTTCCAATGGCTCTGGGCGTTCCTAAATGTCCCAGCTGCAGCTCTGGATGGAACCCAGTGTCTCAGATGATAGGCAGCTGAGCCGGATGGTGCCAAATCCCAGAGCTCTGAGCCTCTGGCTGATGTCAGGAGAGCATTCTCGGGTCCCAGGACAGCACTTCCATTCCTTGGGTGCCTGAGATGGTGGCAGAGGCTCCAGACTGAGCCAGAGAAGCTGTGTGTCTGCCATAACAGGCACCCCTGTCTGAGCACAG
Seq C2 exon
GTGATCCTGCTGGAAGAGGCGTGGAGTGAACTCTTTCTCCTCGGGGCCATCCAGTGGTCTCTGCCTCTGGACAGCTGTCCTCTGCTGGCACCGCCCGAGGCCTCTGCTGCCGGTGGTGCCCAGGGCCGGCTCACGCTGGCCAGCATGGAGACGCGTGTCCTGCAGGAAACTATCTCTCGGTTCCGGGCATTGGCGGTGGACCCCACGGAGTTTGCCTGCATGAAGGCCTTGGTCCTCTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278570:ENST00000617575:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.5=81.4)
A:
NA
C2:
PF0010425=Hormone_recep=FE(40.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATGACCCTGAGTTCCC
R:
AATGCCCGGAACCGAGAGATA
Band lengths:
345-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains