MmuINT0110511 @ mm10
Intron Retention
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59947313-59948520:-
Coord C1 exon
chr9:59948363-59948520
Coord A exon
chr9:59947554-59948362
Coord C2 exon
chr9:59947313-59947553
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TGAGCCCTCTCTGATCACAGGTG
3' ss Score
7.64
Exon sequences
Seq C1 exon
CTGAAGAGAATATTGATGTCACCAGCAATGACCCCGAGTTCCCCGCATCCCCCTGCAGTCTGGATGGCATCCATGAGACATCTGCTCGCCTGCTCTTCATGGCTGTCAAATGGGCCAAAAACTTGCCTGTGTTTTCCAACCTGCCTTTCCGGGACCAG
Seq A exon
GTACACAGCACAGCCTGCCTGCTGGAGCTGGGCCAGGCACAGTGAGCAGTCAGCTTGGGGAAACATGGACCCCTGGGCTGGCGAGGGATGGAGACTTACATAGTTTACCTTAGGGTACTTGTGTCTCTGAGCTGGGGGGCGGTGGTGGTTAGGGCAGTGACAGTGGAAGTATGTTAACTCCCCGAGGAAAAGATGCTAGCCAAAGATGTGTGGAGCCCAGAATGGGATGCAGAGTGGGACCTGTGACTCTCTGGGCCCCATTGCCTTTTCTTCTGTGCAAATTGTCTGACCTGTAGCCATTCTGTGTGAGACAGGAATCAGCATACCCTGAACAAGGAAGTGGTTGACTGTGAGTTCTTTAGAGTAGAGGCTCCCTGTGATTTCAGGCATGAGTGTCCCCCAGCCTTTCTACATCTGAAAAAGAACGCTGAGCTTCTAATAGGCTGGCAGAGATCTCACAGTGGTCCAGGAGAGAGTGGTCCAGAGGTGCTGAGCCCTCAGCCCAGCTATGTGTTTAGAGGGAACGGCTTGGAAGAGTCAGCCAGTCTCTTGAATTCTCTCAGTGTGGACACTCTGGGCTCATCTTGAGGCTGCCCAGCATCCCTAGACTTACCCTGAATGGCCCAGTCACAGGGCTATCCTGGATAGAATCCATGGAACATCTGAAAACCTGGGTAGCTGAGCCAGAGCCTTTGTAGGAGAAGGTTCTAGGCACCTCGAGGGGCTCTTCTGCTCCTGGCCAAGGTGGCAGGCTGGGAGTGCCGGGAGCTATGCACCTGTGCTGACACTTGAGCCCTCTCTGATCACAG
Seq C2 exon
GTGATCTTGCTGGAAGAGGCATGGAATGAGCTTTTCCTTCTTGGAGCCATACAGTGGTCTCTGCCCCTGGACAGCTGCCCACTGCTGGCACCACCTGAGGCGTCCGGCAGCTCTCAGGGCAGGCTGGCCTTGGCCAGTGCAGAGACGCGCTTCCTGCAGGAAACCATCTCCCGGTTCCGAGCTCTGGCAGTGGATCCCACAGAGTTTGCCTGCCTGAAGGCCCTGGTCCTCTTCAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292:ENSMUST00000034831:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.8=90.6)
A:
NA
C2:
PF0010425=Hormone_recep=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCACCAGCAATGACCCC
R:
CAGGCAAACTCTGTGGGATCC
Band lengths:
356-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types