RnoINT0103063 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277105355-277106475:-
Coord C1 exon
chr1:277106164-277106475
Coord A exon
chr1:277105487-277106163
Coord C2 exon
chr1:277105355-277105486
Length
677 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CTCTTCCTCCTTCCCTCAAGGTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
TTCCGGTACAAAGAGGCATTTCTGAGGGACCGGGGCCTACAGATTGGGTATCGCAGCGTCAATGACGACCCAAGGATGAGACATTTCCTCCGAGTCGGCAGGCTCCAAAGTGACAATGAGTACAGAAAGGACTTCGCCAAAGGTCGCTCCCAGTTCCACAGTCGTCCTGACCAACCTGGCTTCCTCCAGGCCAAGAGGAGCCAGCAACTGGCCAGTGATGTGCTCTACAGGCAGCCACTGCCCCAGCACACCAGCGACCCAGAAGAGCTGGGCCTGAAGCACGCCCGGAAGGCTCATCAGCTACAGAGTGAT
Seq A exon
GTGAGTGGCCTCCGCATGCACCCTGTTGCATACTGGGGGAGCAGGCTGAGAAGGCGTAATGACAGCCATTCCCAGTTCTGCCACACCTGTAGCAAATGCCTTCTTGGGATTGGGTGGGGTGGCCCTTCTGTCCCGGCGCTGCCATTTTAACAGACAAGGAACCCAAGCCAGAAGAAGTTAAGCAACCTAGAATCACCCGGGAAATAAGCGGCAGACCCAGGGTATTTGATGCGATAGCCCAACTTCCTATTTTCCTTAATTAATTAATTGGCTCTGGGGATTGAGCTGAGGGCCTATTGCGTCTGAAAGCTCGGGGCTCCTGGTGGCTCCATTCTGCTAGTTCCATGGGGTCTTGATAATGACATAAGCCAGTTTTACGCTTTCCCTGATAAGCAACGGAAGCTCAGAGAGGGGAGGCTAGTTTTCCATGGACACACAGCACATTACGATGGGAACTTAGACTTGAGTCAGATGTCCGCCGGGTGTTTTACTCCACTGGAGTTCCCACAGTTTCAATGGGAGGATTTCAGGAGTGCCAGATGCATAGCTCGGGTCTCTGTGCATCAGGTGACTGCTCTTTGTCCTGACTTTAATGACGTCAGCGTGGCTACCTTTTAAATCTCCCGGTGGTCAGAGCACCCAATCCCGCTGACTTCCCTCTTCCTCCTTCCCTCAAG
Seq C2 exon
GTCAAGTACAAATCTGACTTGAACCTGACTCGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGTCGGGCTGCGGAACTGGCCAACAGGAGGGGTCTGGGGATCCAGGGGGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=21.2),PF0088013=Nebulin=PU(51.9=13.5)
A:
NA
C2:
PF0088013=Nebulin=PD(40.7=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGGTATCGCAGCGTCAA
R:
CCGACGAGCCATTTCCACTTT
Band lengths:
355-1032
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]