RnoINT0105356 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212804564-212806089:+
Coord C1 exon
chr1:212804564-212804878
Coord A exon
chr1:212804879-212805783
Coord C2 exon
chr1:212805784-212806089
Length
905 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGATTCCGACTCTCTCTTAGAGT
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTCACGTGGAGGCCCGGCTGCTAGGTGGTACACACCCCTGTGAAGGACGCCTGGAGGTTCTTCGAGGACTTACCTGGGGCACAGTTTGCCATGATGACCTGGATATGCCCATGGCCCACGTGGTTTGTCGGGAGCTGGGGTGTGGCACTGCTGTATCCATACTCGGGAGTTCCCCCTTTGGCTATGGATCAGGGCCTGTGTGGACAGAGGCCTTTCACTGTGCGGGCAATGAATCACTGCTGTTCCATTGTCTGAGGGAGCCTGGACACCAGTGTGGCCATGATCAGGTTGCTGCACTAACCTGCTCAGGAGAAA
Seq A exon
GTGAGTCAGGCCACAGCCTGGAAGGGGGTGTTGGTGTAGTCCATAGTCTGAGTGACAGGCTGTGATGACATCAGATGGATAGCTCTGGGTGGGTACTCAAGACCTCTGTCCTCTGAACCAGAAGTTCCATGACCCCCTTTTGATGTTTCTCTCCTCTCGTGTGTTTGCTTTTCTTTTCCACCCTTGGGGAAAGGACTGTCCCAATGTACTGAAGATTTCTCTATACTTGGGTCCCACACTTTCCTTTTGGTTCGTTTCCTCATTCCCATCAGTGTGTTGAGATTCAGTTTTCCGGGACTTTATTCACTGTCCTGACATTTCTTAGTTTTTCTCATGGTTTCCATTAACTTCAAACAGACTGAAAAATATCAAGTTTAGGATTGTAAAGAACCTTTTCGTGTGGCATATGGCTTTTAGAATTTCTTTTCATAGCTAAATGATTATTGAGGTAACACAGAGATTCCCTTTAGTGACCAGAAAAGAAACCACAAACAATTGTTTGTAGGTTAATTCTATATTGTATTCCACTGATGGAATCCAGGGCACTTAACTGCCTAGAGTTCACGCTTGCTTTTGTAACCATCATTGAAGGCTTGCGTCTCACTAGAGATGTTCTATATACAGTTCCAATAAATTTGGTATTTCCAGTTTTCCCAGCATGATCCCTGAGTTAAGGAGAGTAGAGGTGTGGGGGTGTGAGAGTTTGGGGAGAAGCAATGGAGTTATTTAGGCCAGGACACTGGAGCTGCCTAGCCTAGCTTCCAATATTTACACTGTGCAAAGCCACTGTCCTGCTAGTTTTTGTGTGCCTGGCTTGCATATGTCCTGTCTATAAGGAACTCCCTGTATGTGGGTGTCTGCAGCTCTGGTTTGTGAAGGGGGCTCTGATTCCGACTCTCTCTTAG
Seq C2 exon
AGTTCCGACTGGTGAATGGCAGCAGCCGCTGTGAGGGCCGTGTGGAGCTTTTGGTACAGAATGCCTGGCAACCCCTCTGTGCTGCTGACTGGGACTTAGCAGATGCCACAGTGCTCTGCCACCAGCTCAATTGTGGCTATGCAGTTGCCACGCCCCAAGGAGGTCACTTTGGAAATGTAGAGGCTTCCATCAGGACAGATGTATTTCACTGCGTGGGGACAGAGCCCCACTTACTGAGCTGCCCAACAAGCACCTTAGGGGCCCAGGCATGCACCCTGGGGAATTCAGCCTCAGTTCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATCAGGTTGCTGCACT
R:
TGAGCAGAGAACTGAGGCTGA
Band lengths:
343-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]