RnoINT0105360 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212807013-212807642:+
Coord C1 exon
chr1:212807013-212807327
Coord A exon
chr1:212807328-212807576
Coord C2 exon
chr1:212807577-212807642
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTCTTAATTTTCCACACAGAAA
3' ss Score
6.8
Exon sequences
Seq C1 exon
AATTCACTGATGTGAGGTTGCAAGAGCACAGTCAGCCATGCACAGGACGCCTGGAGGTTTTCTACAATGGGACCTGGGGTGGTGTCTGCCAGTCTTTGAATGCTGCCTCCCTGAGGGTTCTGTGTGAACACCTGAACTGTGGGTCTCAAGGGCAGCTACTGGCCAGGCCAAGGAGCTCATCTACCATCGAGACTGTCTGGCTGAAGTCTATTCAGTGCAGGGACAAGCATGACAGGTCCTTGTGGCAATGCCCATCAGCACCCTGGAGAAGGCATTCTTGCCTCCGAGGAGAGGAAGCTTGGTTGGTATGTGCAG
Seq A exon
GTGAGCTGTGCTGTGGGCTCCATTGGTGCTCTGGACTGGGTGTAACTCATGGCACTACCTCAGGCTCCAACTGCTTCCTGTTTCCCTTAAAGACACAGTGGAATTCTCAGGTTTTGTGGATATCCTTTAAAACCTAGATTCTCTTCCGTTAGTCATGGGGAAACAGAAAACACATGGGAAAGAAAGAATTTTTTAGATTTTAGGTTCTTGAGCTTATGACATTAGTATGATTCTTAATTTTCCACACAG
Seq C2 exon
AAAAGACAGAAGTTTCTCAAGATATGGAGCAGAGTCCAAACTGCTCATCAACTCGTAGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGTCTGCCAGTCTTTG
R:
CTGGGCAGCTACGAGTTGATG
Band lengths:
304-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]