RnoINT0105765 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80068511-80071816:-
Coord C1 exon
chr4:80071686-80071816
Coord A exon
chr4:80068619-80071685
Coord C2 exon
chr4:80068511-80068618
Length
3067 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
TTTTTTTTAACATATTCCAGGCC
3' ss Score
8.15
Exon sequences
Seq C1 exon
TTTACTTCGCTTTAAGGTCAGCTTTCAATAGCATATCGATGGAGAGAGAGAAGTTGAAGCAGCTGATGGAACTGGACACCTCCTCCTCCCCTTCTGCTCAGGTCGTCGGTCTGAAGCATGCCCTGTCATCC
Seq A exon
GTAAGTTGCTTATGTTTGCCTCATAAATGTCTGCAAATGCAGCCAGGCTTGTGAATGACTAATTCTTTCCATTTCCATGGTTGCATTGAAAATTGATGATTTTCAAGGTTGAATTGAATCTTGGGGGAGAAAAACCAAACAAATTAACCAGATTATATTCAAGCCTTTCTTCAAACTTTACATGGTCAGAATAATCCCAGACCATAGATGCTTGGATTTTCTTAACTGTTGGGTTCTCTGAGTTTGATTTCTTCCAATGTAACTGATTATTTTTTCTGTTTCTATAGAACTGTATGCTTATGTGGCTGCCTTGCAGACATTCATTGGCTAATGCTAACAGAGGCTGACATTTAGAATAGTCCGTAGCTCTGAGGCATCATAAGTTTAGATCGACTTAATAGATAGCACAGGGCAGTGAGAAATTTCCAGTTTACAGGTCTTCCGTGTCCACTGCGAAGTGCTGATCCTACCTAGCGCTCCTCCACATACGTGCGTGCGAGTCTCTTTGATTAAATAGCACAGACCCTTTAGCTCGTTCCCTCTCACAGACACAGGGATGAGTTCTTTCAGGTGACCGCACGTCTTCAAACAGGAAGACCATTGCCGGGGCCCCCAGTGGGTTCCAGCCATTTCCACTCACACTTATTTTCCTGCTCAGATTCAATTTCTTGCTCAGAATGGCTGGGCTCCATGGATGTGCTGTGCCCGGGGCTCCATGGATGTGCTGTGCCCCGATGCTACCTGAGCAGCTGAAGGTGCCTGGTGCTTTAGCCTTCACCTCTCCGGCAGGCAGAGAACTCTTGGAACAGGATACATATTTGCTCTTTTCTCCTCACTTGTCCTTTGGAATTTCTGCCTTCAGAAAGAATGGTTGCACTTGTGGAGTTGCTGTCTGAAGTACCGCTGACTTGTATTTTGGGTCCAGTAGGAAAGAGAAAGGGATTTCAGGATCATCTGACTAGAAGCCACCTTAGACACTGAAGGGGAAAAGTCCATTCATGTTTCCTCTTTACCATGTCATTGAGAAAAGCAGTGCTACAGTGGACCGTAAGCTAGTATACTGTAGCATTACTGACTAACCCTGACCGGTAGTGCTACAGTGGACCGTAAGTTAGCATACTGTATAACATGACTGACTAACCCTGACCGGTAGTATACAGCACTTACTGCAGATACAACAGGTTTTATTATAAACGTGCAATTTTTGGTTTGATTTTTGAGACAGGATCTCATAGTAGCCCAGGCTAGCCTCATGTAGTCATGTGGTCCTGCCTCCACCTCCCATGGGCTTAGATTATAGTTACATGCCAACTATTCGATCTTTGAAGGAACAATTATAAACAATACTGGCTCACTCCACAGCGGAGAGAAAGGGCAGGAGAGAAAGCGACATCGTTTGGACCTTGGGAACAGCTGGCACCGTTGGGTTGGTGCTGTGAGTCTATGCCTTTTTCTTTAAGGTTTACTTCTTACTGGCACATACATTCTCACTGTTCCAGTCTGAGGGGCTGTTGATGCTTTTAGAAGGTACCTCTTGGGGTCCCTAAAGCTCCTTCCTGTCTTCCTCTTGTCCCTTCCCCTTCTCCCAGAGGTCCAGCCTTGTCTCACTAATCTGCTGGGCCACAGTCATTTGGCGATGATCTATAGGCCGGACTCACATTACCTTTTCTAAGGAATATGCTTGCACACACATAGCAGTTTGGAAAGAAGATAAAAACGATCATTCCTCCTTTGTCGACCAGAGTTCTGCATTAGCCTAAGACTTGTCACTTCAATCATTTTTTTTAGAATAATCACAGAACTATTACAATGAATGTATGGATTCTGAATTTGAGATGCACGCGTGCACACACACACACATACACACACATACATACACATATACACACACATTCACATACACACACATACATACACATACACACACATATACACACACATTCACATACACACACATACATACACCATACACATACATACACACACATACATACACACATATACATACACACATACACACACACATACACACGCGTGCGTACACACACACAATTTCTAGCCTCTAGCCACTGTAACAATGAGATGTTGCCTCACAGAGGTTATTATCTGTGGTTGCATGACCCTCGCTCTTGTTCAGTGTTTCTTTGAGTGATTCAAGGTTTCTTAGGATAGCCTATGTCCTCTGTGGTCACTAAAAAGTGAAACCAGAGCCAAGCATGGTGACCTTGTAATCTCAGTCCTTGGGAAGCCGAGGCAAGTGTGAAGAGTCCAGTGTGAGACCATAGCCCCTACATTCAACAGTGATAATAAGAAAGGGAATAAATGAAGCCCTTGCAGAGATCCAGGAAGTAAGCAAGGCGGTCAGGAGAGTCTGGCCAGAGAGTGCACAGCTGTGCCAAGTGAAGCAAGTGCATATCCTGCGTCTTCTGTGAGCCAGGTCCTAGCAGAGAGGTGGGCTAGGAGGTGGGACCACCCCGTGAGGGAATGAATAGTGTGTCTGGTGGTTCCTTTTATGTCTGTGGCTCACGCCCACCCTTCCCTAGCGCCATGGTCCTTTAGTCTTTAGTGAGTCTAAGTAAGGTTTGGCTTGTTTAGTTTTTGAAAAATAAATCATCTTATTCCCTCAAATGGATAAGTCACCAGCACACATATACATATGTTCGAAGACCCCTGGTAGCTGGACTGATAATTAAATCACATGGGGGCGCGTCCACTGGCATCTTGTGAAAGACACTGGGTCAGTGGGGTTGGGGAGCTGGCCGAGATCAGCCTGGCAGGAAGAAAAGATTCTGACTGTGAGTCACCAGTCTTAAAAAAAGCTGATGTTGTCTGAATTCTTTCTGCCAACCTTACTAACCTCTTTCCGCCTCAATTAACACAGAGTATCACGGGCTCGATTGTTACCTCCCAGCCTTGCTCTGGAGCAGTGGGGGAAGCCCAGAGACACTCCTAAGGTGTCTCGCCCAGGGGATTGTCACTCCTAGAGCTGTTGCCTAGTCCCCTGTTGCATTTTCCTGAGCTGTCCCTTTACTAATAAAGCCCTGCTATTTTTTTTAACATATTCCAG
Seq C2 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGTTTACGCAGAATCCATGCAGAGTCTCTGCTCCTCGACCCGCCTGCTGGTCCCAAACCGGGGGACAACCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]