RnoINT0105834 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84994763-85000734:+
Coord C1 exon
chr10:84994763-84994900
Coord A exon
chr10:84994901-85000670
Coord C2 exon
chr10:85000671-85000734
Length
5770 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
GGACGTCTTTGCTCATTAAGGTC
3' ss Score
5.78
Exon sequences
Seq C1 exon
GTATACATCGCAGCCTTTGCTGTCTCTGCCTACTCCTCCACGTACCACCGGGCGGGATGCAAGCCCTTCAACCCGGTCCTGGGAGAGACCTACGAGTGTGAGCGGCCTGACCGGGGTTTCCGTTTTATCAGCGAGCAG
Seq A exon
GTGTGGGCCCCGAGGTGGGAGGACTATTTCCAGGGTTGGGCCAGGGAGGGCCTGGGCTGTGGGGACCAGAAAGTGGGCCAGCGGAGCTAGTGCACAGAGAAGAGCAGGAAGCAGTGGCCCCGGGCCAGGGACGTGCTAATGGGGAAGGGCCCTGCTCTTCTTATGGGAGGCAGAGGGAAGCAGAACTTATGGGGTATCCAAAGGCACATCCCACGGTGTGCTGTGGGGAGTGGCACTGCTAGCTAGGTCTCGAAGGGTGGATTGGAGAAAGCCTGGGTAAGGAGCTGGAAGAATGGTTTGTTTCACATGTGTGTAGAACAGGGTGGATCAACTTCAGCAAAGCTAGAGACAGGGCTGAGGGCAGGCTAAACCCTGTGCTTTGTAGGTGAAGGTGAGGTGGATTCTGGGATTTTATTTGCTTCTAAATCTGAAGGCTGTGGGAGGCGTGGGGGACTCGGGCACGTTTGCAGTGGCAATCTCTAAAGAACACTCGGGCAGTGGTGTGCAACAGTTGGCAGAGGCCATTATCGGGCCATTAAAGTCATCTGCCTGAGAGCCAAGGACATCCTGCACTTAGCCCGTGGCACACTGGATTCAGGAGCTCTTATTTGCATCACCACTGACAGAACTCAGCAGCCAGGTAGATGGAGAGAGACCTGGGAAGTGGCCGACCCTGTACCAGGGTACCCACCCATGGCGCAGTGAAGGGCCCAGCTCCAAGGAGCTGCCAACCTTGTGTGGGCAGCAGATTGGAACAAGTGTGGAGGGGCCTCTTACAGTACCGGGAAGTGAGGTTGGTGAGCTGAGGGAGAAAGCTGGACGGTCCTGTCTTTCTAGTTGAAGAGACTTTGTGCATGGGTGCAGGTGCCACCTAGCAAGAGAGTGGTGAAAGGTAAGAAAGGAGCCGAACCATGTTGCCCACTGGGTGGCACTTCCTCAGAGGAATGTCCTGTTGACTTTGAGGCCTGCAGACCTGGGGCTGGCATGAGGTGACAAATCAGGTGTCACCTGGAGGGTCAGTGGTCCGTGGGACCAGGGGCAGAAAGGACAGGGCAGAAATGGAGTTATAGAGTGTAGCAGGTGTACTCAGCTTGCAGCCCACACTGGCCGAGTGCATCCATGGACAAGTGTGACGTCAGCCCAACACTTTTGTAGATAACATCATATTGCTGTGTCAAATGTCGGACAAGGCTAGGTGTGGTGGCATGTGCCTTTAATGCCATTCCTAGGGAGGTAAAGGTCTCTGTGAGTTTGAGGCCAGTGGTCCACACAGCGAGTTCTAGGAGAGTCAGGACTATATAAAGTGAGAGAGACCCTGCCTCAACCCTCCCCCTCAAAAAAGGTTGGACAACCCTGACAAGAGGGAAAGATTTTATCTTTTTTAGATTTATTTATTTTATGTATAGGAGCACAACAGTAGCTGTCCTCAGATACACCAGAAAAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAGGAACAGTTAGTGCTCTTAACCACTGAGCCATCTCTCCAGTGCCCTGTTTTGTTTTAAACTTTATTCTTCTCTCATACATTACATCCCAACTGCAGTTTCCCTTCCTCCTCTCCTAGTCCCTCCCCCACTTCCCCTTTCCCCAAGAAGAGTGAAAGTTACAAAATAAGAATAAAATCTAGAAAAAGAACCAGTGTGATAGCTCAGCACGTAAGGGTGCTTGCCGCTAAGTCTGACGACCTGAGTCCAATCTCCATGACCTACATGGTAGAAAGAACAAACGAGCTCCGACAAATTGTCCTCTGACCTCCACACATGCTCCTGTGTACAGACACAGGTAAGACGAACAGGCATTTATAGGTACGTATGTAGATATATTAAACTTTATGTGTGTGTTTTGCCTACCTGTACAGTAGGTCCTCCCCTACTGTACAGTACTTGCCTACCTGGTTCTGCAGAGGACAAAAGAGTGCATCAGATCCCCTGGAACTGGAGTAATAGATATTTGTAAGCTGCCATGTGGGTGCTGGAAATTGAACTTGGATTCATTTGTTTACACTGAGAAGCTGCGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGAGAGAGAGAGAGAGAGACACAAAGAGAGACAGAAACAGAATCAGAGAGAGACAGAGGGAGAGAGACAGAGACAAAGAGAGAGACGGAGACAGAGGGAGAGTGAGAGAGAGAGACAGAGACAGAGAGACACAGAGAGAGGCATCATATGAATGCAGTCCGGATTTCCAGTGCCTGCCCAGTAGCTGCCCTTACCTGATAAAACTCATGCTTTCTGAACGATTATGACTTATCAGGTCAGTGACCAACACACTATAAAATAGATTCTAACCGCTCCCAAAGGGTTGGTATGGACTCTTTTTCTTTTTTCTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGGTATGGACTCTTGAATAAATAATATATGAGAGAGAGGGACAGAGAGAGAGAGAGACAGAGACAGGCATCATATGAATGCAGTCCCCAAGGAGGGCAGAAGAGGGCGTTAGATTTCTTTGGAGCAGTAGCTGTAGGATGTTTTGAGGAGGTTCCCAGTATATTCTCTTAACTGCTGATCCACCTTTCCATTCCCTAAACATAAGTGTATTTATGTGTATGGGTGCATATTTACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAGGGTTTAGAGAGATGGCTCAGGGATGGAGAATACCTAGAGGACCCAGGTTCAGTGCCCAGCACCACAATGTGGCTCACAACTGACCGTAATTCCAGTTCCAGGAGGTCCGATGCCCTCTTCTGGTCTTTGCAGACATATAACACATATGCATCCGCGTGGGCACTCACTCATTCACATAACTTTTTTAAGAAAAAAAATGTAATTCAAAACTAGGAAAAAATGCAACTGTTTTCAAGAAAGGTTACCACAAGGCAGAGAGACGAATTGGTCCAGTTTTTGTCGGTGGCGTTTTGCTTTGTTTTTTGAGGCAAAGTCTTACGGCGACGTAACCCTGGCTGGCCTTGAACCTGCCTCCACTTCCTGAGAACAGAGATGAAAGGTGTGTGCCAGGGAAGAGAAAGAAAATTTTACAAAGCAGAATAGAGCGTACATCGGGAGGCAGCCTCCCATTCTGACCCCCGGGGAGGACCTTTGCTACTAGGTGTGCTAGCAGGAATGGTGACCACAGATGCCAGCAGGACGTCCATCTCTAGAGAGGGAAGGCTGAGGATGCAGTCATAGCCCCTGCACTCTTGCTGATGGTTCCCATCACGCAGTATAAAGCCTTGTTCATAAGGCCGAGTGTGCCCGTAGTTTTGTTCCTTCATTACTGAATACGCCTTTGTGCGGACACACCGCAATTTGCTTGTTTTCTTTTTGATTGACATTTGAATTGTTTCCTGTTTGGGGAGATTATGAATAAAAGGGCTATGCGTGCTTGTGTGGGAAAAGAAAGGGGAGGCTTGCAGCTTAGGATGGGAGAAACAGGAAATCCTTTCGTTCAGAGAGAAGAGGCCACGCAGAGAGAAGGACTGAAGGGAGAAGGTGTGGGAGAGCTGAGGAGAGCTGCGGCATGGGGGTGGGGAGCTGAGGAGGGGAGCAGGAGCAGGGGTGAAGAGCAGTGGAGGAAGAGCTGTGGTGCAGGGGAGGGGAGCTGAAGAGCAGTGGAGGAAGAGCTGTGGTGCAGGGGAGGGGAGCTGAGGAGGGGAGCAGGAGCAGGAGTGAGGCCAGAGTGGAAGGAGTTAACTGTTCCTGTTCTCTGTTCTCCCTCTCACTGCAGGAGCAGAGGGCCTTAGGGGTGGCTCAGGCTTAGGGCCTTAGAAGATGGCTAAGCGCCCAGGGCCTAGATGTAGAGCTATATGAAGCTGGATCTTTCCCCTGTAGATTGTGTGTGTCCAGATAAGGTCTCGGCCAGGGATGGATACAAAGAGTGGCTGTCCAGCCAAGCTTGTTTCTGTATTTTAATTATGTCTGTATCAGTGTTTTGCCTACATGTACGCCCATGTGCCACGTTCATGGAGGCCAGAGGGAGCTCCTGGAACTTGGAGTCCCAGGCTGTCGTGGGCCTCCATGTGGGTGCTGGGAACCAAAACGAAGTTCTCCAAAAGGGCAGCCAGTGTTCTTAACTCTTGAGACGACTCTCTGGTCTCCAAGATGCATTATTTTTATTTATGATGTATGTGGCTATGCCACGTGTGTGCAGGTAGCCACAAAGGCCAGAAGAGGTCGCCGAATCCCTTGGAACTAGAGTTACAGGCAGTCGGGATTTGTCCAAGTGGGAATTGAACTAAGGTCCTCAGTTGCTTACTGCATTTATTTATGTATGTATGTGTCTATGAGCATATGTTCCACATGCAGCACACGTGTGGAAGTCAGAGAGCAGCTTGCGGAGTCTGTCCTCTCTTTCCACCATGTAGGTTCTAGAGATCAAACTCAAGTTATCGGGGTTGGTGACAAGCATGGTTTTGGTTGTTGCTGTTTTGTTTTTGTTTTTAAGATTTATTTTGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACCCGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGTTCCGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTAAATATAATAAATAAATAAATCTTTTTAAAAAAAAGATTTATTTTTTGTTCGGTCCCCAGCTCCAAAAAAAAAAAAAAGATTTTTTTTTTCCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCCTACCACTGAGCTAAATCCCCAACCCCCCAAAAAAAGATTTATTTTTTATCTGAGGACACTATCGCTGTCTTCACACACACCAGAAGAGGGCACTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTTAACCGCTGAGTCCCCAGTGACATGCATGTTTACTCACCAAGCCATGCCCTGGCATTTCTGGAGAGTGGGGGGAGCAAGGGTAGGAATGCTGGGTAGAAGGAAGGGAAGCCAAGGTGCCGCCTACAGGCCACGAGAAAGCAGGGTGGTAAGGAGAAAGTCTTGGCTGCAGCCAGAGTCTGGGAAAGGCCAGGAAACAGGGAGGTGAGACTGTAGAAATGTCCACTTTGAAGGTTGCAGATGTGAAGCCATTTCCAAGTGAGGATAAGGCCAAAAGTTTCCAGACTGTAGAGTAGAGCCAACCGTGATCAGATGGGGAGGAGGCAAATGGAGACGGAAGCAGGTCCTCAGGGAGGGCCAGGTTTCAGGGCACAGACTGGAGGCCCTGTTTGGTACACTACAGGGAATGTCTGCCCAAAGCAGGCTGGTTAAGGGCTCTATCTAAGGACTGGCCAAGGTTAGCCAGCAAGGCAGATGAGCAGGGAGAACACAGGGCCCCCACCGGAAGGAGAGAATAAGGACTTGGATGGCCACTGGAGGTAATGGGGAAAAAAGACTTACAATTAACTGATTCTTGTGTAACTAAGTCACGTCAGAGAACCTGGGGTAAGAGGGAGGCATATTAGAAGATCCCAAGCTCCTCAAGGACAGTGTTAAGGACGTCTTTGCTCATTAAG
Seq C2 exon
GTCTCCCATCATCCCCCGATCTCCGCGTGTCATGCAGAATCTGAGAACTTCATCTTCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]