GgaINT0097804 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31584238-31587622:-
Coord C1 exon
chr2:31587485-31587622
Coord A exon
chr2:31584302-31587484
Coord C2 exon
chr2:31584238-31584301
Length
3183 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTTTCATGTCTTGCTATTAGGTC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
Seq A exon
GTACTGTATGCTGCAACACTTACTTTTGCTATTTGATAGACTACTTAATTCTGAATGCATGGCTGGTATTCCCCAGAGCTAATAGCAAAATACAAAATCACTTTGCGTAACCTTAGCCCAGCAAAACTTGAGGGATGCTACAGAGTTATAAATGAAGGAAATGGCTTTGTTTTTTGAGGAAAGGCAGCTAACCCTGGGATGGAATGTGACAACCAGTCACTGACAGTCAGAAGCAAAGGCTGGCAGGCTGTTACTCCAGTAACCAAGTAACTTGTTTAACTAGGGTACAGTTTCTGATCACTACTGCAACAGGCTTTATGTTCTTGTCATGTTCTTTTGTGTGCAATCATTTAAAATTTTCATAACCAGTCATCTTTTTTACAGCAAATATTTCATTCACCTGAGTTGATCAATCAGCAGTATTTTCTATGGCACCATGAATATTTATCGTCCCTGTCCAAATACTTTGTGGACTAAGCCTGTCAAATCTGGTACCGCAGCTTAGTAGCTGAAGGATGTGTACAATACATCAAGATCTATGTATTGCTGAAAATAGTCTCCTTGTAGTATGATTATTAAGTGTGGGTAAAAAAAAAAAGTATAATATTTGAACCAGTCCAGATACCAGAATTGCTAAGCTTGAGACATAAGTTGAAATGAGGTAAAATTTAAAGAATCTGGTTCCTATCAGAATGTAAGAGGGACTGAAAGCTGTCTTATTTTGTCTAGACATTGCAACAACAGAAATTAGGAAAGTGTGGTAGGCAAGGCTGTGCAGCCTAGAAATTTGATCAGTAAAAGCCTTGTAAGAGACTTCCAGTAGTAACTGAAAAGTGTTTTTGATGCACTTTGTACGTCATGTTCTAAAAAGGACAAGAAGTTGTGCTATGTGATCTTTCCTTAGTCTAGGAAGTATCACAGACAAGAGTAAAAATAAGGGAAAAAAGCAGAACAGTCAAAGCAAGAATCAGGTCTAAAGTTCAAGCAGTGTGTCTGAACCTTTATTGTGTTTAGTTCTAAGAGTTCGTTCTTAGAGCAGTGAAGTTAGCAGTGTAACATCATATTGGAGTAGCAAAGCAGATAATAAAGTTTGGTACTTAGTTTAATATAAGTTTGAATTAAAGGAGAAGATTTTCCCCTAAATAAAGGGGAATCACTACAAAGGCTACTTTTCCTAAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGTTCTTGTTTTGTTAATAGTTACTGCTTGGAGGGTGCAGCAAGTGACACGAGTGGTAAAGTTTTCTATATTATTATGGGGTGGAGGAATATTTGGAAGAAAGGGTGGCGTAGGAGGAAAGCAATTTCATGCAGCTTGCAAGCATTAAATATTTCTTTTTGCATCAGGAGCTCTTATTTAGTGCTTGTTTTTGCAAGCATTTTGATGCTTACCCCAGATAACGTGTTAGTGCAGATACCATGTAACGTGTGGAATAGATAAGCAGAATGTATAAAATTATAGAGATCTGTTCTATTATTAGGATCTGTTCAGAATAACTCTACTTAGCTCCATGACCTTACTCTGGAATTATCACAGTTTAAGTGAGAGCCAAGTTTAACCTAGGAATTATAGTGACATCTGGGGTTAATCTGAGCACAGTATGTGACAGAGAGAGTGTTGCTCTCAGTGGATCAGGATGTAGCTGAGAGTAATTAGTACTACTTTATTTCTTTTTTAACCATCTAGAGGTTGCTCAGGGAGAACTGCACAAAATAACAAAATTGTAAAATGAGAAACAAAGAAAATAAAACTACCTTTGAGTCATGCGGGTGATTAAGGAATGAAATTCATAGTTGGAATTAGCAACTTGACTTGAAAATAAAGGTGTCTTTGTCAAAAGGACAGTAGGCATTACGCGTCAGGGCGTTGGTCCTGGTCAGATTTTGCTCTTGTTCACCCAGAAGGGTGAACGTTGAGAGCTTTTACTTTGTGCAGTCACTTTATTATTTACTATTTTCTTTGAACAGTATGCATAGCATATTTGTTTATTTACTTACAACGCTCACTTTGTTGTTTCAGTCCTTGCCTTGTCGTGTATGTGCTATTATTACCCAAAGCTGATAAAACGCAGTGTGTGTCGTTAGAGCTTCACACAAGAAAATGTGGATGTGCCACTTGTGCAGTCTTAAGGTGCTAGATGGAATTTCATGGCTTTATTTCCCCTCCATTTGTCCCCTTCAGTGATGTTGATTGTTGTCCCCTCCCCGTAGTCAGGGTTTAGTAAGGATCTACTGTACAGAAGTATTTGGCCTTTTGGTTTTTGTTTGTTTGATTGGTAACTTTTACCTTTTTGCTGTCTGCTTAAAGTGCATCTTTTGTTAATATATGAATGAGGCTTTCAGATGAAGTGTGATTATTACATTAGAGACAATGTACAAAATCTATGGTTAGATTTCTTTCAACTAACGAGTTTACAGGCCTTTTAAACAACGCTTACCTTTTCTTTCAAGGCTTCTTAGGTCTCAGTACGTTACAAATCTCACTGGCTCCCCCTTAAGGAAACAACTGCAAAAGGAAAGTAAATGTTCAAATTGTAAATGAATGAAATAAATGAATAAATGAATGAAAAATAAAAGGAAAAAAAAAGGGGGGGAGAACAAAAAAGGAGAACAAAACAAAATGACTCTTCAAAGGTTAACATTTTTATCTTTTTTTTTTTTCCTTCTTTCATGTCTTGCTATTAG
Seq C2 exon
GTCAGTCACCATCCACCTATTTCTGCATGCCATGCTGAATCTGTGAATTTTGCTTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]