BtaINT0105964 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71461049-71471227:+
Coord C1 exon
chr4:71461049-71461186
Coord A exon
chr4:71461187-71471163
Coord C2 exon
chr4:71471164-71471227
Length
9977 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTCAACTTTGTTTCCATCAGGTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGTATGTGGCAGCCTTTGCGGTGTCTGCATATGCATCTAGCTACTTTCGTGCCGGGAGTAAGCCTTTTAATCCGGTCCTTGGAGAAACATATGAATGTATTCGTGAGGACAAGGGCTTCCGGTTTTTTTCAGAACAG
Seq A exon
GTAGGTATACACCCTTTTTTTGTTTGTTGGGAGAAGTTGCACATGTCTCCCATTAAGCGTGCTTTTGAAATATTTATTTCCCACCTGTCACTGGCTTCCCAGTAACAGAGATAATTACAGTTCTTCTACACACAAAGAGAGAGATCAGTTTCCTTCCACTGAAACCTTGCCACCACCCATGGGCTTAAAGGTGCTAGCCAGGCTGGGGCTCGCTTGGCTGTGTGCATCACCACAGTTCTTTCTGTTTAAACGTGTAGCAGAGAGGAATTTTTAAAGCACGAAGCATTTGCCCAAACTGCAAGTTAAGAGATTTAAAGTGTGCAGCCTAGCTCATTGACATCACCATTCTAAAACAGGAGCACTGCCATCAGAAGCAGGAGCACCAAATAAATGCATTATTCTTGGTTTTGATTTAAGAGAAATCATTCATTCTGTATATTTATTCATTCTATCCATAAACCGAGATTTTACCACATGCCTAGCATTGGGTGATGGGCCAGAGGCAGACAAGAATGTCCGTCCCTCAGCTAATAGATGGACAAGGCTTATGCTCACACAGCCCGAGTTCCCTGAGGTTCCACAAGACCCTTCCCACCTGTGTTAGCAGTGAGTAATATTCAAGAATTGTATCTCTGGACTCAGCCAGCCTAGATTCCAATCTCAGCTTTCTCTCTCACTAGGTTTGCAACCCAGGGCAAGTTCCTTAACCTCTCTGTACTTCAGTTTCTTCTTTAAAGTGGCAATGAGGATAATGGTGCAGACTCGGATGGTTTTGCAATGATCAAATGAGTTATTCTCTACAAAGCTCTTAGAGCACTTATCCTTGAAGTAGGAAGTGTTACATGAGGGTTTGCTATCCTTATTGACCTACATATGACAGCATAACTTGCAGTAGTGGAATGTTGGGGACATCCACAATATCTGTCAATAAGGAATTGTTTAGCTGAAATAGAGTGCAACTTGACTGAAAATAAAGACCACTTCTCTCCCATCGCGTTAAGGCAGCACCTCAACGTGTCTATCCCTAAATGTTAGCCTGGGAACATGAAACATCATTGATTCCCTCCCAATTCTTAGAAAACTGAGGATAAAAGGATGAGTTGCTGAAACATGATTTTCCTCCTATTATCTTGGTGCCTTCTTTATAAGTGGGCTTCTTTATAAGTGGACTGATATTATGGGAGTAAGAAGGGGAGGGTGGTATGACTGAGAGTCTTATGAAGATGGTGCTGGTCTTAACTGTGAATTATGAGCAGCGTTCTCTGAAACTCAAATGAAAATGATTAGCCAACAATCCCAAAGCAAGTTGTCAATTGTTTTCTGGTTAGCAGTTAAAACAAGAAATTAAACGTTGATATTTGAAGAGTAGGGGTTTAAATCAGTAGTTAAAGGGTAAGATAATGTGATTCAAATTCAACTGGATTATTTAAACACTAAACCTAAAATGGAATGCGAATACATGAAAATATAATTTGGTTACCATGGTATTCTATGCACTCATGTGAAAAAACAAAGGCCAAAAATAGCTCCAGACTACAGCAGACAATCAAGACGGGATGAATAGGTAGAAGAAAAGAGTAGTAACATGTGCTTGTGTAAAACTGAGCTTCAATTCCATGAGCCCCTGACAGGGCAGGGCTGATTTGGGATCTGTGGCTCCCCTGTGGTGGCAGAGAGAAAGAAAAGGGAGCCCCCGGACATGTGTGCACAGAGATGGAAAGAGTTGCATAACTTAGTCTTTAGTTCCATGAAATGGATCCCAAGGAAATAAATAAGAAAGAGATCTGGTCATGTTTAGTAGCATAGGGCGTGCTAGGTGTATTATGGACTGTTTTCATTCTAACTCCACCACTGTGTGGCCTTGTATGAGCTACTTAAACTTTCTAAACCTCGTTATTTGTCTGTAAAATAGGGATGATCATGCTTAGTTCATAGGCTGCAGGAAGGATAAGTAAAATAACACACTGAAACTGAAAGTCCAATACTTTGGCCACCTGATGCAAAGAGCTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGGGAGCAGGAGGAGAAGGGGACGACAGAGGATGATTTGGTTGGATGGCATCACCAACTCGATGGATGTGGGTTTGGGTGAACTCCAGGAGTTGGTGATGGACCGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCACGAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGATGTGAAGCACATTCAGTACTTGATTATTGCTCTTATACTGAGAGGCAAGGCAGCTTTTAAAATGCTTTTTACTACCCAGTGTTATGAACAGTTAGAAGAGTGTTGAAGTAAGATATCCTTTATCTACTTTACTGATTGAAATGGTTCGAAAGTGGCATAATGTCACTGCTGAGTCTCTGACAGAAAGCCATCCAGGAGGCTGCCAGGAGTCCTCACAGCTGGCTTCATTGTGGGAATACCACCGTCCTGATCACGAGGGAGCCACTTCATCTGTCTGGAATTTAGCCTTAGGGCATAGGTAGTGGAGTCTTTTAATATATCTGAGTATGAATGAGTCTCGCAGGGACAGAATCACACTAGCTAAGTTTATAAGAGACTGATCTATAAATCAGAATACTACCCTATGCCTTTAGAATATAAAATAGACTTGCCATGGGGACCAGATGGCTTTGGTCAGCCTGACCAGGGATGTTTTCCCATAGACACATTTCTTAAGGAAGACAAAATTGTGGTCATCACATAAGTATACAGTGAGATGGAGAGGTAACTGATTAATTCAATGTGCCAGGCTGTCTGCTGCCCTAGGAGTGGAAAGGGTTTTGACCAGGGTCCTCCTTTCCCAGCCACCAGGCAATATATCAATTCAGCCTCCTTACTCCCTCTCTTGCCCTTGTTGGTTACATTGACCAGCCTACCTTTTGTATGCGAAGGCTTTCTAATTTAACACATCTAAAGAGAGTGCCTGAGCATTTATTCTGTTTTATGCTGGTACCTGCCAGTCTGGCTCCTTCTGCTTCTAGCCCAGCAGACGTTCTGTTATGGAGGCAGCATGTCTCCACCCGTGTCCGTATGTGTAGTGATGGACTGCAGCTTTAGAGTTGGGAGCCTCTTTGCTTTCTTGTTCTTCTCTACAGTGAGTAGAGGTGCTGAATGACTGGTGTAATAAACTGAACAGAACCCCTGAATTAATATTTTGGGGTGGAACTCTAGTCTAAGGAGGACACTGTTGGAGATATCTCCAGGTGAAAGGACCTAGAAAAAAACAGATCAATCACCTTTTCTACTGAGTTTTCTAGACAACAGGGTTGGGTGATTAGGAAAGTGATTTTTATCCATTTCCTCCAAGCCCTGGGATTTCATTTGCTTGTGGTTTTGGTGGGGATGGGGAAATGTTTGGAGTTGTCGGTGGCTAAGGAAGTTGAAGTGCTACTTCACAGAGTTCAGCTACATGGAATCTTGCCCTCTTTATATCATCTCTCACGTAAAAGGCCCAAAATGAAGTATCAAAATGACTCATGCAGTCAGAAACGAGAGAAAGCACTTGCTGTTCAAATTTTCCTCCTAACAATTAACTAGTATGGTGCTTGCAAAGAGCTTTATGCTTTTCAAACTTGATCAGGATCTTGTTTGATCATCACAATAACCCTGTGTGGCCAGTGAGGCAAGGATCAATTACAGATGAGAAAACCAAGGCCTAGCCCATCAGTGCCTTTCAGTGGTCCTCAGCTGGCACCTTCTGCTTCTATTCCAGCGTCTTCTCTCCCTGACCTTTTTTTGGTATGTCTTGTGTAAGTTTAGTGACTGTGCTCAGAGCTGCCAGAGTCATCAGCTGCCCAAGTGAAAACAGCCTTTTGTACTCTGTTCAGACTATCGGGTTTTGCCTGTCATTGTCAAGTAAACCTTTCATCCTGCAAACTCACATAGGAATGTGTTCTCGACTCCCATTGCGGGCTGGGCAGTGGCTTTTGTGAACAAGGAACATTCAGGAATCAGTCATAAACATTCCCGTCACATGTGCTAACCTCTGACTGTTCCACCTTCTCAGGGGAGCGGTTTCCTTTCTGCCAAGAAATCTGATTCAGCCTTGGTTTTCTAAATAAGCCCAGAAAAGGGAGAATCCAGAAGGAAAGGACTTCCTTTACCTTCTCAGGGACTAGGGGTCCAGCCAGCAGGTTCTTCCTCATTGGTTCTCGGGCAGCCTGGGTGGAGTTTCATCAGGGACTAGACTAGACTGGTCAAAAAAGTCATTTCAGTTCACTTTGCTTCTTTTTTCTGTACCTTTGGGAACAGTTTGGTGTCCATAAAGGATATGCAGTTAAGCTATTGTCTGAATGTGGCTTTTCCTGATTACCAGGAACTTCAGCTGTCAGATCACTGTTCAAGTCATTTTCAGCATTTACCCATCCAGCCATGACTGTTGAATTTTTGATTGAAAAGCTGAGCAGAGTTATTGAAAGTTACTAAACTGTAAGAGATTCATATGGAGTATTTTTTCCTTTGCTTCACAGACACAGCTCTTCTTCCTTTTCTATTACTCGTCAGATTCTGAAAAAAACATTCTTGGCTGGACTTTAAAAATACCATACCTATCACTTCCCACTGTGCACACTCACATCACCCATCTGAGTGGTTCTTTTATCTACTCATAGGCAGGGTTATTTACTTCTGATTAAAATGGCATCTTATTTAAAGTAATTATCGGAGTAAATTCAAAGCTATTCAAGTAAAACAAGCAATAAATCAACTGTAAGGTGACCAAACCAGTGCTTCTGCATTTCTAGGTTATTACTCACTGTATTTTTTTTTTTTTTTTAAAGAAAACGTGTGTTTATCAAATAAGTACTTAACTCTGAACTCAGGAGAAGAGAAACTAATTGGCAACTGTTCCCCGTCCCCCAAATCAGACTAGTATTCTTGGCCACCTCCTTAGTAGCTTTCTTTTATAATCCACATCCTGTTCATCAGCAAATCCCAGGGTCTTCCTTCCAAAGCCATTTTCACTGCCACCCCACTGATGCTGGTCACCAAGCCCAAGCCATCGGCATCAATGACTGGACTTGTTGCAATAGACTCATTGTCTGGTCCCTTGTTCCCACAGCCAATTCTGCACTCAGCAACCAGAGTGATGTCTAACGACTTCTGCAGTCACTTGGAATCAAACCACAAGTTCTGGCTGTGGCCCACAGAGCCCTCTAAGATGACACCCCCAGATATCATGCCTCTTCCCACTTTGACTCATTCAGCTTCAGCCACACTGACCTTTTTGCTCCTCCTAAAGCATTCTGAGCATCTGTCAGCCCTGCGCAGTGGTTGCGTCCTCTGACCTGGACATACTTCCCCGGGCTATCTGTGTGATTGGTGTCTTACTTCCCTTAGCCTCAGGGATTTCCATCACAGAGTCCTGCCCCAACCACCGTATCCAGGATGGCATTCCCACTCACCATCTCCCATTTTCATTCTTGCTTTATTCTCCTTCCCATGTTACCACTGGCAAATCATATGCTTATATCTGTCCCACCCATTGCATTTCTGCACTAAAATGTAAATTCCAGGAGGGTAAAGATTCTTGTTTCTTTTTTCTCCTTGTATCCACAGTGACTAAGACAGTGCCTGACACATCACAGACAATCGGGAAATGTTTGATGAATGCCTTGGTCCCCTCCCTGGGTGATTTTTGACTGGTCACTTGTTCTCTTTTCCACAAGCATCCCTTCATGGTGAGAGACGCATCCAGACTAGGAGGACTCTATATTTATGGCTCTGAACAGCTGCAGGACTGAAAATTTAAGGTTTTTTTCCCTCAATCTGAAGAAGAAAAACCTACATAATACACAAATATTGAAACACTCATATTCTTGTCTTCTTACCACCCACCTCTTATATAAAGTGCATTCTGAAAGCATAAACCAAAAATCACCAGGACAGGGTGAAGAAAGACCTCAGCTATACAAATAAATCACAAAAATTCTTAACTGCCAGAGAAACTCATTGACTTTGAGATTGTAGAAAGAAAGATACATATAAATACTTGCACAATAAAAAAAACCATATATACTAATTTCCTGAATGTTTGGTCCTTACCAGTAAAAAGTCGCTCCTATTTGATCAAGGGGGAGAGAAAATGATGGAGAAAGATACTAAAAAACAGTCCAGAGTGGGTTCAGCCAGCAGGTTAACAGTGTTTGCTTTGAGTCTAAATCAGTTCAGACTCAAACTCAAAATCTAATACCTTTCTGTGCCTGGGTTAAGATGTAATAAAAAGATAAACTCAACTAAATCCTGTACTACCAAAGACAGGTTAGATGGTGCCCATTATTCGTTACTCCAGTAGATATTAGAGAGATTACCATCAACAAAAATTAAATGATTAACTGGAAATTACCCCCTTTTCACGGGTTTTAGACTTCCCTGGTGGCTCAGATGGTAAAGCGTTGGCCTACAATGTGGGAGACCTGGGTTCAATCCCTGGGTCTGGAAGATCCTCTGGAGAAGGAAATGGCAACCCACTCCAGTACACTTGCCTGGAAAATCCCATGGATGGAAGAGCCTGGTAGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGAGACTTCACCTCACCATGGGTTTTTAAATTAATCGAAGCCTTAATAGAATCTTTTCCAATTGCCTGGAATCCACTGCTGCCTCTGATACTGAGATTCAAAGAAAACAGATGTTAGAACGATAGTATCTTGAAGCCAGAGGAATTCTCAGACCTCATTTTCAAAGAAGTAAACAAGACTCAGAGGGGTTGGAAAGGTCAAACTCAGAAGGTTCATTTTCTAAATATCCATGATGGGAACTTAACAGTGTGCCTAAGCTTTGGGCAGGAGCCAGGGCCCAGCTTTGAGAGCAGCCATCAAGGAGCAGCTAGGGCATCGCAGGAAACCGTGTTGGATTTGAAGTCAGAAGACCTGAATTTAGAGTGCTGCCCTCGTGAATTTAGACGGCTGCCCTCGTCAGTGACTAACTGTGTAGCACTGGGCAGGCTCTTGACTGGGAAAAAAACCCGTTTCCTAATTCATAAGATAAGGGTAATGAAGACACAAGGTTACCATGAGAGCTAAGTGGAAATACCACTCATGACAAAAAATTAAAATTTAATCTCTGCTGACTCTGTACTAGCAGATAATCCTGGCACTTTCCATGGGCTATCTTTTTTTAGTTTGCAGAGTCAGTGGTACTAGTCCTGTTTTACAGATAAGGTAAGGGGGGCCCAGAGGGTTTAAAAACACCCTCAGGGTCACTCAGCCAGTAGATGATATTGATGATATTGCACAGTTAGCTTCTAGATCTGGGGGACTCCAGGAGCAATCTCTCATTCCCTGACCCTCATGCAGCACATGGCAGAGGCTTCAGATATGTTTCATGAATAAATACCTGTGGGAAGGAAACATAGGAAACAAAAATAAGGCATCAATTTAGTTTCCCTGGAAAGCTTTGTAAACTTCTTAAAAGTCATGTACATCAAATAAATCACTCCCAGAGGTGTTTTTAAGCCAGAAAGAAATAAACCAAATCATTGATATGTCAGTGTTGGGATTTATGCATTCAGAAAACAGCCCTTCAACTCCATCTAAAGGCACTTTGCTAAGCAGTGATTCATTAATCTGACACAACTATTTTAAAAAGGTCAAATTTGCATTTTATGGGACATATGTATACTTTATGATATGATAGAGTTGCTTTTATAATTCATATGGACAGTATATTTATATCCTTGTTTCATAGGATTTTAAATTATTACAGAAGAGTTTATAGTTTTTATGTATTGTATTTTGCTTTGATGCTTATACTTGCCAGACTTGTAAAATGCCAAATTCTTGACCAAGACTGTGATCTTCACATTTTTTACTGCATTATTTCTATGGGAATGACTATGATCTGCTTTGTAATAATCTACTTAAAATCTGCCTACGTTATGGGGCAGGGGGCTATTCCATAGCTCCTGTCTGCTCCACTGGGGGGTGGATGAGGCGAGTGGAGTGAAGAAGTGAGGGGTCAGTATTGTCTTGCCCTAGTTTAGTTTTATATGGTGCTGTTGTTTAGTTGCTACATCATGTCTGACTCTGCACCCCTATGGACTGTAGCCTGCCAGCCTTCTCTCTGTCCATCCCCAGGAGTGGGTTGCCATGCCCTCTTCCAGGGGAATCTTCCCAGTCCAGGGACAGAACCTGCATCTCCTGCATTGGCGAGCAAATTCTTTACCACTGAGCCACCAGGGAAGCCCTCTTCTGTATGATCCCAAGGTTTAAAAAGTAACTCCACTGTTCTCCTAATGGGTAAAGAAGGGGAGACAAGAATTTAGCAGTTTGTGTGATATAATGTATCTTCAGGGGGTTGGATTGAAAGAAAAGACAGTGAAGCAAAGCATTTTAGGAGTTAGGTTTCTTAGTGTTTGAGATGAAATGCACATAAGCATGGAGAGGAGCTCACATTCTCAAGAGGCCACAGTGAGAATTAAAACCCTCCAAGGGACAGCAAATATGCACTTCCCACCTCATAGTGGATCTGGGATTCATATGTTCTTTGAGACTTGAAAGATAGCTGCGCTGTTGACATCTTTGTCCCTACTTTTCTTCAAGCCAAGTGGATACCATTGCACTCCCCTCCTGTCCCGGCTGTTCTCCACCTGGAAGAGGGCCACAGAAGAGGTTCTCAAACATGTTCCTCTGCAGTCCAGGGTTCAGAGCAAGGCCAGTGGTTATGGATTGGTCACCCCAACTTCCTGCCACACCTGTTCACCTCAAGCAGGCCTCTGAGTATTCTGAGTTCTTGATACGTTTGAAAACAGGGTGTGTCTATTTAAAGGACTTTTTTTTGGAAACTTTGAAAGCCACCTGTAAACCAAAAATGCTGGGTTTTACTTCCACTCCTCTCGGTGTGTTTGGGAAATGTTATTGTTAGATAATCTTTCTGGTTTCAGTTTTCTCATCTGTAAATGTCCTAAATGTAAGATAATGTTTGCTCAGAACCAGCTATGTCATAGAAATTTCTGGAAACATCACTAGCAGCATTACTCTTTCATTGTAGCTATTTAGTTGCTAAATTGTGTCCGACTCTGCAATCCCAAGCAAGCATGCCAGGCTTGTAACTCATTTACTAGTACTGCGTGATAGTACTGTCATGATAACAGCGCACATACTGCTCCTGTGCCTTGAGTGTTACTGAGATAATGAAGAAATCTGAGGAGCCATTTTCTCTTTAGCTTCTTCATTAGTGAGCAAAACAGAAGTTAATGACCCCAGTGACAAAAGGCAGGGAAATGATCTACAGTCCCTGTTACAGAGGACTCTCTTTTCTGTAATGTAATTGCATATTTACTCAAGATATTTTTATGAACAAAAATTGAACAAAAACTTTTTCTCAGCAATTGATTGGTCGTCTTGTCAGTGATCTAAAAAGTAGCTGGACATTTGTGATGCAGAGTTTTCAAAAAGATGCCTTGCATTGTTGACCCACTGAGTGGGCTCAGCAGATTAAAATCTGCTGAACCAAAGAGTTTTTTTGTGTTGCTTAGAAATACTTAACATTTAAAATATGTACTATTTGACATCTTAATTAAAACACTTGCAGGTACTTTCAGAATTGCATTGATTTTGACCTTGGAAGCTAACGTCAGGTTAGCTGATTTTTAAGTGGGCAGCCCTGTGTCTCTGTTTTTATTTTCACATCTTTCAAAACATCTCCACTCTCATCACTCACCACTTGGCTGCTTTTTCCCCAGGCTTCCAGAGGCTTCCATTCACAGGCTTTTTCCTGACAAGACAGAGCTGACTGTGTCAGGAGCTCCCTCTTGAGGACAGACTTGTTGAAGGGAAACTTAACAAGTTTCCATTCAGTTAGACACTGCGGTTGTATTACATCTCAGTGCAAGGGAGAAAGAAAGGATTTTGTGAGACATAAAAGTTAATTTTTTGTTTTTTTTTCAACTTTGTTTCCATCAG
Seq C2 exon
GTCAGCCACCATCCACCTATCTCTGCATGTCACGCTGAGTCTGCAAATTTTGTTTTCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.8=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]