RnoINT0105770 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80045075-80052521:-
Coord C1 exon
chr4:80052384-80052521
Coord A exon
chr4:80045139-80052383
Coord C2 exon
chr4:80045075-80045138
Length
7245 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TTGTCCCTTGTTTCCATCAGGTC
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTATACGTGGCAGCCTTCGCCATCTCTGCATATGCATCCAGCTACTTCCGGGCAGGCAGCAAGCCATTTAACCCGGTCCTTGGAGAAACGTACGAATGCATCCGACAGGACAAGGGTTTCCAGTTTTTTGCCGAGCAG
Seq A exon
GTGATGTGTGCCCTTTGTGTTTGTGGAGAGCATTGCTTTGCCTGCTATTTAATGTGCTTCTGAAATATTTATTTCCCCCTTTTGCTGGTTTCAAAAGGACTGAGATAATTACAGACTTAGCCACATAAAACCAAGGATCCATTTTCTCCCCATGGAAGCCCAGCTACCATCCACGGTACACAGGCCTCAGTAGCTCTGAGCACCTGCTGGGTTACATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACATTTGTTCTCCTTCAGATCATTAGCAAAAGGATGTGCCGAGGTGCACAACCTCTGACCAGAGTGTGACCTAGAGGTTGAAAGTGTGTTTGAACAGTTAGCTCCACCATTAATGAAGCCCGGCTGCCTGCCTCTCAGAGTGGGCATGGCCATATCATTTCAATGGCCTAGAGTTTTATTCAAGAAGAATCACTCACGTGTGTATTTATTCCTTAGAGTAATAAGCTATGTCTTTTTTTTAAATGTTTACTGTGTGCCTGGTACTATTGCAGATGCCCAGACCCCACAGTGGAGTGGGAGGCCATAGAGACAGACAAGAGACCCTGTCCTCACGTAATGGATGAGCATGTTGTCCTTATGTGGCCTGGGGTCCACTAGATCCTTCCATGGACGTTAGCAGGGAAGGCCCAGGAGCCTCACAGCTCACATTAGGAGTGCAGTTCTGTTTCTATAGGCTGCGGGACTCAGGGCAAGTTACTGAACCTCTTTCTGCTTCAGTCTCCTCTTTGAAGTGGGGGTGACAGCTACAGTCAGTGATCTGTGGGGATAGAGGAGGGTCTGGTCTATGAAGTGTGGCTGCTCTGTGAGATGCCTGTCCTCATTGCTGTGCGAGGGCTGTCGTGTCCCGGGGAATGAATACCCCGTGTGTTTGCCCATGTGGAACACTCCTTCAGCTAAAATAGACATCGTACCTTTAGAAAGATGAAAACCACCTCTCTCCCCTTTCAGGAGACTAGTCATCGTTGCTTTGAAATATTTCTCTCCCAACTCCTAGAAAACTGAGGAGAAAGAGGAAGTGGGGGTTGCTAAAACACTTTGCTCTGATTATTTTTGTCAATGGATTTGCATTATAGGACTGGGAGAGACGCGTGGTGAGCTTGGCTTTTCTGCCGCCCACTCTTTGCCTCTCTTTTTCTTTGAGATGATCTCACTGCAGATGCAGTCTGGCCTCAAACAACTCTCTTCTTGCCTCAACCTTTTGAGTAAAGGGATTATGGGTCCAAACCACCACACCCAACCTCCAAGAAACTGAAGAATATGCTGCTTTTCTTAATATAGTATAGGCTGGGAGCAGTCATGCCTCAGGTAGGAGGGTTGACAGTTCAAATCCAATCTCGGCTCCATAGAGGGTTCTAGAGCAACTTAGGCTGCCCTATCTCAGAAAAAAAAGAAAATCATGAAAACCAAATCCTAAAACCATTGTGTCCCCTGGAACTCAGAGGACAATGAATATACAAAAGCCCAGAAGTGTATCACCAGTGTCTTCCCAGGTGAAAATAAGATAAATATTGCTTAATATGGGCAGGTGGGGGCTAAATCAGTAGGTAAGGGATCCAGTAATCGGTCTGATTCAAATTCAGTTGGGTTATTTAAATACCAAACTCAAAATGGAACAAGAATAAATGAAAACATGATTCGGTTACCATGGTGTTATATGCACTCTTGTGAAGGAAAAAAAAAAATGAAGGCCCAAAATAGCCCCAAACTACAGCTGACAATCAGGGCAGGAGGAAGAGCTGTGAGGGGAGAGGGGCATGTGCTGTGGAAAGGTGAGTGGCAGTCCTCGAGCTCAGGAGCGGTGGCACCAGTCACCGGATCTGCCAGCACATCTGCTGTGGCGCGGCCTGGGTCCAAGGACAGGTGCCCATGTACTCAGAGAGATCACCAGAGAGCGCCAGATACCTTGGTCTGTATGAACTGGGTCCTGAGGCAAAAAGCAAAAGAGGCTGGCTGTTGTTTGCAGCACAGGCCGGGCCCGTTTGCTCAGTGTGCAGCCTTGCATATGCAACCTCAGACCTTGGAACCTTGACTGTGCCCTCTTCCAATGGGAGTAACAATTCATGGCCCATAGAAGGAGGCTGGGACAATAATACACTGACATGAAAGAATGCATGGTTATTGCTCTTATATTTAGAGAGAACTTTTAAACACCTTTAAATAGAGTGTTAAGAATAGTTTAAGGGGAGTGACGGAAGCCTAGGAGGTAGGGTAAGATCTGCTGTACCCCCCTGCTAGCACAAGAGTCTGAGTGCTGCTGGTCAGACAAAGAACAAGCTCTCAGGCAGCCTTATGCTGGCTTTGCTGTCATAATGACCACTGGTCCTGGTAGAGACAGAGCCATATCCTTTGTCTGGATTTTAGCCTTATGGCTTAAATGGCTGCTGCTTTTAGTGTACCCAGGAAAAGCTGAGCCTCCTGGGACTGGGATGCTACCACTGTATGTATTTGCTGGGACAGGCGGATTTTCCCCATTAGCAGGTTATGTGGGAAATAGGAATATAATCACAGGAGAGTATACAATGTGAAAATATGTCTTCTGCCATAGAAGTGATCATGGCTTAGGTTAGAGTCTCCTATTTCTGGGGTGCTGGGCACACCTCAGCTCTTTNCGGNNNGGGGCNATGCACACACACACACTCACACACACACACACATACACACACACACACACACACACACCTTCCTCCTGTCCTTATGCAAGTCTTCACTCAATGACACTGTATACGAAGCCCTCTACTGTGATGTATCTAAGACATAGCATCCTTGTCATTTTATGTCCCTACCTGCTTGTGTGGCTTTTCTGCTTCTGGCCCAGGAGACCATTTGCCCAATGGAAGCAGCGTGGGGCTGCACTTGTCCAGTATGAGCAGGTGACAAGCTTTTGAAATTTGGGGGGATTCCAATTGGATCCCTTGGAACTGAAACTATGAGAAGTTATGCCCACTTAGTGCGGTATTAGGAACCAAACTCCTGTCCACTGCAAGAACAGCAGGAACTCTTAGCTGCTTAACCCTCAATCCACCCCCCACCCCCTTTATAACCCTTCTTTCTTTTTCCTGGCTTAAGATGTAGTAAAAACAGAGATGGATGAGGTTACCCTACTCAGGATGCTAAGGCAGGAGGATCCCAAGTTTCAAAAACAAAGAATCGAGACTAAAAAATTAGCAAAGACACAGCCATTTGGGCTATCTCTTCCTGTGCAGAGAGGCTTCCAGCCCCAAAGATCAAGCATCAGCTGTGAATGGGCTCATTCTAAAGGTGTTCATTCAAATGGACAAGCCCTAGACTTTCAAACTGGTGTCTTGTAGTGTTCACATCTGAAGACACTGAGAATAGGTGTTAGCATCAGTGTGTCGAAGTCAAAACAGTCTCTGACTTCACTCTACAGAGAAATGCAGCACAGGAAAGTTAGAAAGGTCAGATTAGAAAAAAAAAACGTTTTAAAATAGTGACAGGATATTTGTTGCCTTGAAAATGAAGCCTGTGGAATGGACAGACAGTCATGGGAGATCTGTTAGGAGGATTCTATAAGAATCCAGTCAGGTAGGAGCAGTCAGGGTGAGGAAAAGTAGTCAGATTCTGTATCTATTGTGAGGTTTCAGCAGGTAGACTGTGACTTTTTTGATTGATTATTTGGGGCTCTCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAACAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAGAAAAAAAAAAAAAGATTATTTGGGGCTCTCACATCATGTACCCTGATTGCATTCACCTCCTACTCTTCCTGTCTGCCCCCCTCCTGCGCCCCTTGACCTCTGCTCTCCAAAAAAAGAGGGGGGTGGATGGGAGAAAAACAACTATTCCGTGTTGTTCACATACTCACTGGAGCATGGTGGAATTCCTAGTGGCCCCACCCCTTTCAGGAGAGATGGCCCCGCCTCTCACCAGCCACTGAGGGGCTCCTACTAGTCGATGGTTTCTGGAGGCGTGGATGCAAGCAGAGAAAGATTTTTTTTTTCTTTAAGTGGTCTTGAAAAGGCACCTGAAGGGTTTAGGAGGCACAGGAGTGACATCTTTGGATGCAGTCCCTGCTGTGCACAGAGAGAGCACACCGTGGGTTCTGGGACCAGGCATAGCACATCAACTGGGAAGGTAGTGGGCAGCAGGTTCTATGCCAAAAGCCCCTGCTTCCTAGTTTATAACATAAGGTTAATGAAGACAGGAGACTACTCTGTCTTCATGAAACAATTACAACTCCGTCTCTCCTGAGCCAGGAAGAAATCACTCAGTGTAAAGGTGCCTGCCTCCAAGCCTGACGATCTGAGTTCCAGTCCTTAGACCCACATGGCCACACTGACCTACGAATTGTCTGCTGACCTCCACACGCTAACACTTAATACCCAAACAAATGCAAAAGAAGTTTAAAAAATTTAAACACACACACACATACACACACACACACCCCTTTTGAGTTCATCTAAAGGCAATTGACCAAACCCCATTTTATTGATCTGCTATCATGGTTTTAAAAGATCATGTGTGTATTCTTATCAGATGTGTATATCACAGGATCTTCTTTAGTCCCTATGGGCTGTTGCTTCTCCCTATATGGCGAGGTATCCAAGGCCTTCCACAGGACCCACATACTTCTCCCTATTTTATAAGATGCAGAACTATCACAGAGCAGGGACATGGTGTTTGAATACCACAGTTTGCTTTGAAGTTTGTATTTGGTGATCGTCATAAGCGCACCAGGTTTCTCGTGACAGCTTTCTTACTCTCTCCTACACTCCGTGGCTCCTGCCCCACTCCACAGTGGGACGTGTCAGCTGAGTAGAGACCTGAGGTTGGAGGAGTTAGATTATTCTAATTTAACTGCGTGCAATCCTGGGGTTTAAAACCTGACTAGACTATTTTGAGAGCTGTCCCATGGGAGAAAGGCGGGTGATAGAGCTCTTTGTGATATGAGCTATCCCCCAAGGGGTTGGACTTCTAAAACTAAGGACAGAGAGCAGCAGAGGGCTGCCTTAATTATAGGAGTTGGGTCCCTGAGCTAGTGAGAATTCCTCTCCAAACCTGCAGAGAAAAGTAGGGGCCTCGTGGCGTCAGACAGCTAAGAGGACACATCAGGGACAGCAGGGTTCCGTCTCCTACTTCCCATAGCTGGGATTTCGTTGAGTAATCCAAAGGTGTGGGTGCTATTTTTGTCTTTGTCTGCTTCCCAGTCTGTCAGTTAAGGCTGTGGCTGGCCGCTGGGGATCCTTCAGCCCTGCAGCTCCCCATATACCCGGGTACCGGGTGGTTTGCAAAGCAGGTTCCTCAGCACAGGTGGGCCCAGAGCAAGGCGTGCGACCATCCTGTTTCCTCACACACCTGCTCGTGCCAGGTAGGGCTCAGGACTGAGCCGTTAAAGCCACTTTTTTTTTTTTTTTTTTGATAACAATTTTGAGAACAGTTCAGCAGCTTAACACTGAGGCACAGACACACTGACACGCTGACACTACTGACTCTTCAAAAACTGCGGTTTGGGAAACTTGACCCATCTGGTTTCAGCTTGACTCATCTGGTTTCAGCCTCCGTGTTGCTCCTAAGAAAGACCTTGGGTAGATAGATACTCCAAAGAGAAAATATCTCCGTTAACAGCTATTGAAACCAGAGAAATTTCTGGCAGGGTGCTGCCAGTATGACTGCTTCTGTTTTGTTCTGGAGTACTGATCTGGTCACCAGCAGAGCCCTGAGTGCTACTGAGAGAAACGAGAGAGGGCACACAGCTGCCCCCGTTTTGTTTTTTGCTTCTTAATTGATGGATGGATAATTGGTGGGCCCCCAGTGACAGCCTCTGTTTTGAGGATCATCCCTTCTAGGATGTACTTAATCAGTATTTCTTTACGTATTGAAAAACACATTTTTTCTTTGTGAGCATGTTGTGTGTTCATGCATGTTTGCACATGTGTATGTGTTCACGTGTGTGTGTTTGTGTGTTGGCGGGTACATGGGTGGAAGCCAGAAGAAAACCTTGAGTTGTTCCTCAGGTGCCATCTACCATGGTTGGGCTGTTGTTCTGCGATAGGGTGAGACAGTGGTCTGGTACCCATCAAGTAATCTGGGCTGGCTGACCAGTGGAGCCCAGAGCATGTGTCTCTGCCTAGTGCTGGGAAGGCAAATGCCAACCCAGCTTGCTTATGTGGGTTCTGGGTCTGCGTTCAGATCCCCATGCTTACACAGCATCTACTTACGGAACCATCACCACAGTCCCAACACATTTCCCCCTTCATGATTGGTGAACTTTCTTCAATGGCCGTGATTAGACCTGCTTGACAGAGACATTATTCTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAGAGACATTATTCTTAAGAATTGTCTAAGGGGTCAGGGAGTCAGATGGCTCAGAGGATAAGGGCGCTGGCTGACAAGCCTTAGGACCTTGAGTTCATTCCCTGGAACCCACAAAGTGGAAGGTGAGAACTGGCTCCCACAAATGGCTTTCACACTTCCACATATGAGCCACGGTGTGTAAGCGTGTGTATGTGTGTGCACACTCGCCCATGCACAGTGAGTTAATGAGTAAAGAAATAGTTTTAAAGAACTGTCTTGGGTTGACTTCATCAGTGATTTAAGAGTCTGGACTTCCATGACTCAGTTTCCTGAGCCGGAGGGAGATATGGTGCTGTTACTTGTATAGTAACGCCTCTGAACAGCGACTCTGACCGCTTAGTCGGAATACTGGCAGGTCTTTTCAAAGCATGTCAAACACAGTGCTGGCCGGGGAGGGTGCAGTCCTCCAGCGTCCCTGCTTTTATTTTATACTGTTAAGATCTCACCTGTGTCCTCATCCCTTGATGAGGGCTTGGCTTCAAGGAGGCCTCCATTCACAGCTTTCTTCCCACCAGAGCAGAAGAGCTGGCCGTGTCAAGAGCGCCCTCTTGAGGATACACTTGTTCAGGCTGCAGCACTACCCCTTTGCCCACAGCTCAGCTCAGGGGAAAGGATTTGACTTTACAAGCAGAGCGGTATGAACTCAAACTGTGTTTGTCCCTTGTTTCCATCAG
Seq C2 exon
GTCAGCCACCACCCGCCTATCTCCGCCTGCCACGCCGAGTCCCGGAACTTTGTTTTCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]