RnoINT0107085 @ rn6
Intron Retention
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107261534-107263798:+
Coord C1 exon
chr6:107261534-107261675
Coord A exon
chr6:107261676-107263717
Coord C2 exon
chr6:107263718-107263798
Length
2042 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTTTCTGATGTTCCCTACAGAGG
3' ss Score
9.23
Exon sequences
Seq C1 exon
TGCTCTAAAAGCTGTGGTTCCGGCATTCGGAGACGGCAGGTCGTTTGTACCATTGGGCCGCCCGGTCGCTGTGTGGACCTGCAGTCGTCCAAACCTGCAGAGGTAGAAGCCTGCAACAGACAACCCTGCCATCTCCCTCAGG
Seq A exon
GTAAGGATCAGGCAGGGAGGGTGGCGGCCGCTCGTTCCCTGGCTGCCAGGGGCCTTTCCCTGGCTTCTTTCCCACATCTCTGGCCATTGCTGCCCCTGCTGTGGCCAATCCATATGCAGATCCCTGTGGAGTCAGTGTCTTGGGACTGCCTGAGGGCTAGGTGCATGGCTCCTTTCCCTCTCTATGCTCTCCCCCAGTGCACCTACTATGTGGGAGGGAGGTACTCAGCAACTGTTGAATGGCTGAATGGGTGGAGAGAGAACGAATGCTGCTTCTGCCTGTCTCTGCGTATCTGCCCTCCACTTCTCCCCCATCCCTCTAGGGAAGAAGGCCTCTCAGGTACGGGAGCCTTCTGCTGAGGGAAGGGTGCAGAGGCGTGGGTATGACACTGAAGGAAGTCAGGGTCATGGCTAAGTAGGCGTGTCGGTTTGTGGGGTCCCAGAGGTGTGGGCTCCAGGTAGAGACAAAAGGATTCCAGTGGAGGTGTGCGGCAGGCTCAGAGCATGAGCATGCTGACCCCAGTGTGACCCTGGGCACGTGTGAGTCCTCTCACGTGGACACTGTGGGCAGCAAGGGTGACTGTCCGTCCTTGTGGCTGTCATGGGGTACTGTGTCTGAGCATATGGACCCCATGGGAGAGAGTGGTGCTGAGCTGTATCGGACGGAAGCCATTCACGGTTCTGGAGGCAGACAAATTTGGTTCGTTGTCGGGGTGGGGGTGGGGGCATCTGAAGAAGATGAAAGGCAGGAGGAGCTCCAGGGAGCAGAAGGGAGGAATCCATGAGGTAAAATGGTGGTGGCATCTCATGTGTGCAATGTCCTGGACACTGAAAAAGGAGACACAGTGATGCTCTACTGATAGTATGATCGTTGGTTTGTTGAGAATAACGTAGCCTAGGCTGGCCCCAGACTTAATGTGTAGCTAAAATGACTTTGAACTCACCAGTCTCTCTACCTACCCAAGTGTTGGGGTTATAGACGTACACCACCATACTAGACGGAGAACTGACTTCTAAAACAATTCTATATAAGTTTTTTATGTGTATCGTATTTTGTGTGTATGGAATCTGTGCACTTTGTGCATGCCTAGTCCCTGCAGAGCCAGAAGGCGCCGGGAACCTCAGAAACTGGGGTTACAGATGGCTGTCAGCCGCCATGTTGGGGCTGGAACCTGACCCCTGGTGTCCAGAAAGAACAAGTGCTCAGGGATGCCTCCAGCCTTGCCACAATTATATATGAGCACACTGTAGCTGTCCTCAGACACACCAGAAGAGGGCACCAGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCTCCAGCTCCACAATTATATTTTAATTAACCCTATTAAGGCTGATTCTCATTGTAGCCCTGGCTGGTCTAGAACTCCAACATCACTCTTGTAGGCTCTGGGCTCCAGTCCTCACACCTCATAGCAAACACTTCCTCCACAGACCTGCCCTTAAGTCTACGTTAATTATTCCATCAACTCCAAACTGAGAGAGCAGAATCCACCCCCACCCTCACTGAGACACTAACTGGGGGAGTGGCTCTTTAATTCCTTATTTAAAAAGCAAAACAACAAAAACCAGTTCTCTGATTTTTATGATTAAAAAAATTAGCAGTTTTATTAAGACTATTAACTGCTAAATGCCATAAAAATCCATTTTTTTCTCTTGCTGGGACTCAAATCCAGGGCCTGGTTCATGCTAGGCAAGCGCCCTTCTAACTCAGCTGCCTGTGGCCTCTGAGCCACTTGGTCTAACAGGACAGTGACTTAATTTTGCTAAAGCTTCAGAAAGTCTTTGATCCAGGCATGTTGATATATCCCTACAATCCCTGCACCCCAGAGGCTGAGGCAGGAGGATTCCTGTGTGTTTAAGGCCAATACAGTCGCAAAATCTCTGCCAGATGTCTTTTATGGGTTTGGGATATTGGTTTTTCTCTCTGATGTTGCTTTCTGATGTTCCCTACAG
Seq C2 exon
AGGTCCCTAGTATACAGGACTCGAGGACCCACCCCTCAGACCGCAGGATGCTGTCAGGCCCCCAAGTGTCTCCCGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448:ENSRNOT00000012757:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.964
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(84.0=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]