RnoINT0108369 @ rn6
Intron Retention
Gene
ENSRNOG00000000993 | Pcp2
Description
Purkinje cell protein 2 [Source:RGD Symbol;Acc:1306217]
Coordinates
chr12:2173880-2174131:-
Coord C1 exon
chr12:2174096-2174131
Coord A exon
chr12:2173995-2174095
Coord C2 exon
chr12:2173880-2173994
Length
101 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CAATCCTGTCTGTCCTTAAGGCA
3' ss Score
5.22
Exon sequences
Seq C1 exon
CATTTAGAGAAAATCTGCAGACCCGTGAGGACTATG
Seq A exon
GTGAGAGCAGAGATGGGGAGGCAGGTGCTGGTTCAGGTGGAAGCTGGCTGGAAGACAGAGAAGGCACAGACCCAACTAAATCAATCCTGTCTGTCCTTAAG
Seq C2 exon
GCAGGTTCACCTGACCAGGAAGGCTTCTTCAACCTGCTGAGCCACGTGCAGGGCGATCGGATGGAGGAACAGCGCTGTTCCTTGCAAGCTGAGCCAGGCCAGACCCCAGAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000993:ENSRNOT00000001313:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAATCTGCAGACCCGTG
R:
GGCTTTCTGGGGTCTGGC
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]