RnoINT0110772 @ rn6
Intron Retention
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8841432-8841902:+
Coord C1 exon
chr3:8841432-8841494
Coord A exon
chr3:8841495-8841880
Coord C2 exon
chr3:8841881-8841902
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTCTTTCTCTTTCTTGCAGCAA
3' ss Score
11.11
Exon sequences
Seq C1 exon
GCTTTGGTCAGAAGTCTGGGCCTCCAGATACCAGTGGTGGTACAGAGCATGTATATCTTTAAG
Seq A exon
GTGAGCTCTGCAGCCTCCTCAGACTCAGTTTCCCCATTGGACTGTTCATTCAAAGCTTTCCATTATAATAGACTAGGAACTGCTGGAGTTGGTCAGGTTTCGGGGAGGGCATGTAAGGCTGGCCTCTGGCTAAGGTGCTTGGTGCTACACAGATCTCAGTTAAAACATGTTTAACAAAGGAAGGGGAGCCCAGTGCCCCTTGTTCTGCTCTTAGCTCTCAAGGGCCCCCTCAGGGCTACCTTCTCTAAGAAACTGTCTAAATCTCTTTGCAGCCCTCCTAGGCTGAGCACATAGTAGGTACTCAGTAGATGCGTGCTAGTGTAGGACTCAGATCAAGAGCTGTCTGCTCTTCTCCACTCTTACCAGGTTCTTTCTCTTTCTTGCAG
Seq C2 exon
CAACCTCACTTTGGCGGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794:ENSRNOT00000022552:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(7.6=100),PF063756=BLVR=FE(31.7=100)
A:
NA
C2:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]