RnoINT0112998 @ rn6
Intron Retention
Gene
ENSRNOG00000042289 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:RGD Symbol;Acc:1563504]
Coordinates
chr11:57247226-57255556:+
Coord C1 exon
chr11:57247226-57247467
Coord A exon
chr11:57247468-57254061
Coord C2 exon
chr11:57254062-57255556
Length
6594 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCAACACTTTCTCCATGTAGGAA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTTCTCATTTTCTACCACTGTCCCTTCTACAAGCAATACCCATTCCTGTGGCCAGGGAAGAAGATCCCGGCACCCTGGGCAAACACCACGAGTGTGCAAAAGCTGATTCTCTTCTTGGAGACCACCTTGAGTGAGCGAGCCCCACGTGGGGCCTTCCATGTCTCCCAGGCCATCCTCACCCCAAGAGTGAAGACTATTGCCCGAGGCCTGGTGGGGGGCCTCAAGAACACACTAGTTCACAG
Seq A exon
GTAAGAGGTGACTCCTACCCCACAGGTAGGGTCTATGTTACTGATTCACTGGTGGTGGTAGCTGGTTGATTGTTTGGTTTGGTGGATTGTTTGGGCAGTTGGGTCGATTGGTTGATTAGTTGGTATCTTGAGACAGTTCAGGCTGGCCTTGAACTCACAATCTTCCCATCTTTTGTTCCCTGATACTGGAATTAAAGGTTTACATATTTAGCTTCATGCTCCAGAAGAAGTTTGCACACACACACAGACTCCCCTTCCCCCTCCCTCCCCTCTTCCTTTCCCCTCCCCCTTCTTCCCCTCCCCTCCCCCCCCCCCACACCTTAAACTGTGGAGATAGTTCAGCTAGTACAATTCTTGTCTTGCAAGCATGAAGATCTGATTTCCAGAACCCCTGCAAAAACAATCCTGAGCACAGTGAGCCCACACAATCCCAGAATCCAACACTGGCAAACCTAACTTAATTGGCAAGTTCCAGGCCAGTAAGAATGAGAGCCATACAAGCACATACACATGTACCTACACACAATTTTATCTACACACATATCAATACACGTGCTCACAACATTTATCTTGATTTTCTTCTCATAACAATAGTAAAGCTTTGAGGATGAAAAAAAAAACCATAAAACACTATTTTGAAAAGCTGTGGATTCTAGGCGTAGTATATGAATAGTGCTCTAAGAATCTTTCAACACTTTGCTAAAATGTTTACATTATTCCATAAATACTCACTATATTTTGATACTATGACAAGCACTCTGAGCCAATGTCTCTGAGTGATTTTTTGTTCGTTTGTTTGTTTTGGTTTTTGTGACACACACCCATGGTGATCCTCTTACTGCCCACACAGCTGGGTGGGATACTCACTGTTTAAGAAGCATTAAATGCAGGCTGCTATGCTCCAAGGTAGGGACTGTGAGATCGTCCTCCATGAGTTTGTTCTTCTTGAGTACCATGCCACGGCTCCAAAGACTATCTTGGGATAGAATTAAGCCTGATATACAGATAAACAAGGATGACCTAGTCATTTTGTATGAGATGATAGTCTTTGTCCTGGGCACCAGTGAATGATGGATAAAGGCTGTCAAGAAAGCATATTACATGTATATGAACATTTGGGTATATATGTAGATTGTGTATGTGTATTTGTATGTATGTGTATACGTATTTGTACATGTATGTGTATAATGCATATATGTATATGATATATGTATATAGAGGGATACTATAAATATACTTTTCAGTAGGCTATCCTTTGAAATACAAGTTTAAGAAACTAATGTATTTCTAAAAATGATAATGTTTTCTAAAAATGGTATTTACAAGAATCTATTTAGTTCTTGAGTACTGGGTGCTGACTGGAATTTGGATAGTGAAAGTTGTGTTCAGTCACATCACATGCCCAGTCACATGTCCAGACAGTCACATGTCCAGACAGTCACATGCCCAGTCACAGTCATTTGGTTCTGAGTTTGAGAGCATTTCAGATAATAGCCATGTGCCTGGTCAGGAGTTTAAAAGGCAATCAACAACTGTACTCTTCCTTCGTACTGAGAACTCCTGATAATGTCAACCATGGACAGAACCGAGGGCTCCTTTCCAGGTAGCCCTTCTAAGTCTCAACAGAATTAACCGTATTCAGCTGGAAACAAAGCAACCCATGGGCAGGCCATGGTGCTGCACACCTGCAATCCCAGCATTTGGAAGGCTGAGGCAGGGGAATTGTGAGCTCAAAGCCAGGAAAAGCTATGACGAGGCTAGATGGTAACACTCTGGGGACAAGGGTATGGTAGAGTGAAACCCTGACTGACTGCAATCCTCCTGACTCAGTCTCCAGGAGTGTTGGGATTATAAGTGTGAGCGACTATGTCTGGCAACCAGACGAAAAATCAAAACAAACAAAAACCTTAATCCAGTGTGATACCTCTTAAAAGAACCTAGAATTATACATATTCAAGTTCCTGTTCCATTTTCCTCTTTCTTTTAATAAATTTGTAGCTTAACATTATTTACTCATGCAATAAAGTCAAGTTTTCTGTAGGTCAAGCAAAACAGAATGAGTACCAGGGAAGAGGCAGGTGGAGAGACACCGAGGAATCCTGTAGCTGTTGCTCCAAAAAACACAGTCCTTCAGCAAAATCTAACATGAACATTTCTATAGACCTGAGGGAAAACCAGTCTACTGCAAATCTCTCTGGGCAGCTAAGAGAGACTATTTCACAGGAAGGATAGGTCTTTTATTCTGAATAAAATGTGACTTCTTTGCAAATGATTTTATTTGACTCTTAAATCCAGGCCAGTGTCTTGAAGTGGAGAAGGGACGCACCATCTAAGGCCCTTGTGTGTCCTCACGTAAGACAATACTCAGGGAAGCCAAGTGATCCAGCACAGCAGATTACAGCTACGATTACACAGAGCTCCTGTGAGAGCTGAGAGCCTGTCAGGACTGCAGGGCTTCTGTCTGTGTAGTCCTGGGCACTGATGTGAGCAGAGAGGATGTCTGAGTTTAGTTTGTCAGTGTTCCCAGAGCCATGATTGAGTTAGTAGTGCCTGGAACTGGTCAGTTCACACTGGTTACAGTTGGTAACCCACAACATCACTATTCTTCTCCTATCGTGCTTCCTCAGTCTTGCTGCCACTGAATTTCAGACTCTCTGTTCAGTGGTAATGAAGACAGCATGAGCACAAAGGCAAGGTCTTCCAGCTGGCAGTGAGAATGTGCCCCTTAGATGAGTAACTCTCTTGGCATCCTAGCCCTTCAGGTCATGGGCGTGTTAGGGGTGTGCTCCTACATTCCTGTGCCTACACATCAGTGGAAGAGGACCATGGCTCTGGTTAGGACTTTGTTCCAAAGTACCAGCAAATAACATGACTCTCATTTCATCACTGAGTCATCTCGGACTCTCCCCCTCAGCAACCTGAAAGCTGTCTGGACTGGCTGAACCCTGAATGGTTGTACAGAGGTGCTATGTAGCTGAAGACCCAGTGTGTCTTCCTGATGGTGACCAGGTAGTTTTCTTGTTGGGAAGGTAATGCCCAATTTTCGGATGAGCTTTGAACATGAGAATGTTTTTCACTTTGTTTCATCATCCCGGAAGGAAGCCACAAACACAGATAGACAATTCAGACTGAATTTCTGTTGTAGTTTTCCTCAGACTGGAAGACACCTGATCCATAGTACCACAGTGAGTCAGGACGCAGTCAGGAGGCCTGGAGTTGAAGCTGTCCCTATTAATGTCACTGAATTATGTTCTCTCTCTTCAAATCCTTCTATTAAAATAATAACCTAACTAGGTGTGGTGGTGCATACCTTAGACCTAGCACTCCAGAGGCAGAGGCAGACAGAACTTTGTGAGTTCAAGGCCACCCAGACCTATGTACTGAGCCCCTGCTTCAAATAAAATAAAACCTTAATCTGAAGGTGAGTAAATTTGGAGAAATTGTGTGTTGAAGGGGGAATTAAGTTGAAAGGCCATTACAGTGGGTTCTAATCTACACACACTGATGTCGAAACGACATTTAAACCCAAAGACAATAGAAGCTAAGTATGGCAGCACCGTAAACCTGTAATCCCAGCACTCAGATAGGCCAGGGGACATTCAAGGTCATCTTTGAATATGTAATACGATCTCCCAAAGCAAACAAAAAGCAAGAGACTACAGGAATATGTGTGCCCACACAGAGAAAATGATACATGGGGTGCTGGGGGAGGGGCGTGGGGAGGAGGAAATCACCTGCAAGCCAAGAATAAGGGTTCAGAAAGAATCCTGCCCAGTAGCATCTTAACCTTGAGTTTGCAGCCTCTAGAACAGAGGGAAATAACTCCAGTTCTTTGAAGTCAGCAGTGTATGTGTTGTTATGACAGCGCACCTGAGCTAGCACAGTCCCCTGCACAATGGGATGTCCCTGCACAAGTTCTTGAGGTCTCTGAGACGAGTTTTTCTTCACCATGTGAATTGGAAAGTATGGATTTATAGTCTGCAAAGGGTTGGGGTTGCCTCCAGGTGTCAAGTATCATTTCCCCAGATTGACCAGCAGATGGCGCTGGCTCTCCAAACATAGGCTCTGACCAGGGATCTTTTGAATCCCTGAGTGTACCAGGCTCGCTACCACTGCGTCCTTCCTGTGGACTGCAGTGAAATTTGGTCTTTTGTCTCTGAGAGTTCTGTGCTTTTCAGACCCTATTCCCAACACCTTGTTATGTGGCTATATAAGGAATTTCCTATCCCTACTCCCCCAAATGTTTCTCTCTCTACCTTTTTACTCTTTTGTTTATGATCCCTTTTCTTGGCCAAATACATGACATGGCTATAAGCAACCATGGCTCTGAACACTTTCCATGTACTATCTTTCTGACCCATCCTGTTTCACAGGGAAGAGCAGCCGAGGGACAAGGAATTCTAGTAAATTCAGATCTTCAAGAGAGAGAGAGAGTCCCAGCTAAAAATAGAAGAACTTTTATCAGTCACAACCAGCTAATAATAAAAAAAAAAAAAGTGAATTGGTCAATGATACTGTTTCAGCCTATAGCTGTGTAGTCTCTGCTAACTGAGAGAAGAGCTGAGGTCTTAACATCATTCTGGAAGACCAAGAAATGAGGCTACATCATGGTAGAGCAAGGGTAGCTTCAACGGAGGATAGAAATGGGAGGATGGGGAGATAGACAGAGAGAGCATGAGTAAGAGAAGAGGGGGGGCTTGGATGTTAGCTAGAGCGAATCCCACCCAAAGGATTCCCAGTCATGCAATCAACTGTAAGGCCGTTTCTAACTCCCTTTGCTGGGTATTCAGGGAGCTGTTTACTGTGATGCAAGACAGCCAGCTGCTTTACCTGCTCTTCTCTTCCTCTGTGGTTCCTCACACTTAGGCCACTTTAGCTTGAAAGTGTTATTTACATCACAAGCTCTGAGCCTCTGTCACACCGGAAGTCTTCTGTTTATAAAATAGCCCCAGCAACTCTACTCAAGGGATAGCTGATTAAATATCAATCTATTAAGGAGCCACGAACAGTACTAGGATAACTAGCCCTGTGGAAAGTGAATCCTGACCCTTACTCTATGCCTTTTGTCAAAATTAACTGCTGGGAGTTTTTTAAAAAGTAAAATAAAGGTGAATTGCCTGAAGCTTTCAGGAGTAAATGGGGAAGGAAATCTTTGTGAATTGTAAGTGAGTGTGTTTCTTAAGCAAATCACAGAAATTAAGAGAAAATAAATGATGAGGGATCGGAAGGATGGCTGGGAGTTAAGATAAGTGAATACTTATGCACTCACTGAAGAGGTGCATAAGCCAAAGACACAAGTTCAGGTTTCAGCCTGTAACTTCAGCTTCCAGGGATCCAACTCCGTCTTCTAGACTCTGTGAACACCTCCACACACACATGCGCATACCCTCACAAGGACACATCCACATACGTAAATCTTTCTAAAGAAAAAAGATAACAAATTGCAATCCATCAAAATTAAGGCATCCAGGCTCCACAAAATATCTTATTGAGAAAAACAAGGCAAGCTGTAGGGTAGAAGAAATGTTTGCCAAATATATCGGTCAGAAGGCTAGTATCCAGGATGTAAAAAAAAAAATGATTTCTAAAATTTAACATTTAAAAGAAGAAAGAGTGAATACTGTCAAAAGCATATTGTGTGAAACTCTCAGAGAACAAATACAAAACTACAAAAGGATAGAAATGTTTAAAAACTAAGTGGAAAATTGTTAAAGTGATGAGTAGATAGAGACTTGCAAGAAAAAGGCACACAAGTCCAGTCTGCGTTCCCAGGAATCCTCCTGCTTCAACCTTTCCATGGGTAGAATCACAGGCATCAGTCACCATACTTGGTTTAGAATGGCTAGACTTCAACATTAGTGGGACTAATTTGTAGGGAGAATGTTAGCTGTTCAGAGCTTTTCTGTTCTGTTGCTGGGACTGTAAAGTTGAGTGCCCCCCTTGAGGAAAGCTCTGGCAATTTCTTATAAAACTAAATATAAATAAACCCTCTCATAGAGCAGTTTGTCCCTTGATTTTTATCCAAGTTAAATACAAGGTAATTCCCATAAAAAGACTCATAGAATGCCTATAATAGTTTATTCATAATGACTGCAAATTAAAAACAGTTGGTGAATCTATCAATAGGAAAATGGATAGGCTATGTTGCACTCATGGAGAAAGAGAGTGATGGACTAATAGATACGTGGCAAGCCAAACAGTAAGTAACATATCAGTGGCAAGAGATCGGGGTGGATCCACTTACTGTAAAACTTCTTTCCACTTGCCATATGTTTGGAATTTTTCACGAGGAACCCTAAGAACCTAGCAATAAGAGGACCATTGGACTTGGTGTTATGAGGCCCTGTTGATGTGGCTGTCTGTTTGATGCTGGTAGCGAATAGTCATTTGCATAGGAGAAACCCTGGAAAGGTTAGTTCTGGTGGAAGGTTGACCTCTCTCCATGGAGACCTAAGACTTACGTTCCAGTAGCCCCAAGGGCTTATGTGTTTCTGACACACATTTTATCGTAACAGAATTTCCTTTTTCTGGAGTTGCCATTCTAACCCCGACTATCTGTTTGTCCTCTTTTCACCCAACACTTTCTCCATGTAG
Seq C2 exon
GAATCTCCCTGCCATCCTTGACTGGGTGAAGACTCAAAAGCCTGGAGCCATGGGTGTCAACATCATCACATCTGACTTTGTGGACCTGATAGACTTTGCCACGACTGTGATTGAGTTGAACGACCTTCTAGAGGATCGAGCTCTGACTAAGTGTTGAATCTGTGCTTTGTGTAATTTGATGTTGAGGTTCTTGATCCAAGGTAGGATTCTAGAGGGTTCTAGTAAAGATGGCTCCCTCCTAGGCAGTCACGGGGAAGTGAGGAAGAAAAAGAGGCCCTCTCCTTTTCCTCACATAGCTATTTGGATTAGAAAAAAAAAATCTAAGGGTTTGCATTTCCCCGAAATGAGACTTTTACACACTTAAGTCTAAGAGAAGAATGCACATTTCCTATGGTTAACATCGGGATCTCCCTAGTGGCTTGGGGTGGCAAAAGGAGGATGGAAGCAGCCTTTTCAGGTCTCACGGGCTATGCAGCGTCTTAATTGGCCCAGCCTCCGGTTGTCTTCTGGGGCCACTTGAGCCTCTGTGAAGACTAAATCAGAAAGGCATTCCTGGTCAGAAGAATGGTACATGCAAGTGTGGGCCACCCTGAGAGGTCTCTGTTATCAACCTAGAGCTCTAAGGAGCTCCTAGGGAGCCAATAAACTGTACGGCATCACTGCTTTTCCACAGGAGGAAAAATGTTTCTTATCACAGTGCTCAGCCACAGGCCAGCTCTGCGTATCTTGCTTGGGCTGAAAGTGGGCACCTTTGTTCTTCATATAACTAGTGCACACTACCCTTGGCATCAGAAATGTATTTCCTCATTTTAATGTGTTTTGGGCCCTATCTTTAAAGTGAAAGGAACAGTAGCGGGAAGTCTTTTGTGTGAGGGCCCGACATGAACTACCCATGCATGTTTGTTGCCTGCATGCCAGAAGTCTTTAATTCTGTAGCCTTCTCCCCAAACGACTATCAGGCAAGTACCTGCATCGTTTCGGCAAAGTCCTCTTTGGAGCAAGGTGTTCAAGCCAGATAGCAGAATCATGTCTTATGGTTGTCTGGGACCGGGACTGCCAGAGGACATAAGGCTTGCCCATGACACTGTGGAGGCTGACACAGAATATGTGGGAATGTGCAACGGAATTAAAGGACAAAGTTCCAAGTGGGCTCGGAGCCAGTCTGTAACTCCTTGCAAACAAGACTACCTCGGGGACATTTAGCGGGACTCGTATGTCGTCAAGTAAGGGGAAAAAAAGCAATGTTGGACCATTTCCGCTTGTTTTTTCCACTTGGTCTGCTTTCTGTGGATTGTTCGCCAACTACCTTTGCATGAGGGCTTGAAAACACAAGGGGAATTTTTTTTAATTGATAAGAGGTGCTTTTTATTGATAAGAGCCCTCTTTTGTTTTTTCATTTGCTTCGTTTGTGTATTTATTGATTTATTTATTCATGGAGTAAGGATCTGTGGTGTTCCTTGCCTGGAGAATGCTTTCAGATGTTTACTGGACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042289:ENSRNOT00000038207:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PD(3.0=6.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]