GgaINT0113914 @ galGal4
Intron Retention
Gene
ENSGALG00000015375 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
Coordinates
chr1:87805812-87808822:+
Coord C1 exon
chr1:87805812-87806053
Coord A exon
chr1:87806054-87808330
Coord C2 exon
chr1:87808331-87808822
Length
2277 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCTTTCTCTTTTGTCTAGGAA
3' ss Score
10.83
Exon sequences
Seq C1 exon
GTTCTTATTTTCTACCACTACCCCTTGTATCGAGAATTTCCCTTTCTATGGCCAGGGAATAAAATGCCAGCACCATGGGCTAATACGACCAATGTGCACAAGCTCTTACAGTTCCTAGAGACCACTCTTGAGGAACGAAGTCGTTACGGAACTTTTCATGTTTCTCAAGCAATTCTCACTCCTCGGGTGAAAACTATTGCACGACATCTGGTCCGTGGCCTAAAGAACACGCTTGTTCACAG
Seq A exon
GTAAGGACTTGTCTTGATTTCTCAGTTCTTTACTTCAAGTGTTTCATGTTGAAATGGCACTGAGTAAGCAAGAAACTATAGTGTTTGCTTAAAAGGTCAGTCAGCAAGTCTTACTTTTAGGAAGCATGCAGTCCTACTTCATTACTGTTGCTGGGCTGAGATATTTGCAGTCATTAAAAATCTCTAATTATTGAAAATAGAGCTGTAATGGGGTGTAAGTATAAGTATGTTTTGTGGTAATTGGGGCTCTTGGGAGTGTGATCCCACAAAACATGGGCTTGTTTGCCAAAAATCACCAGAATTCTAACAGTCCTGGTGGAACCCAGCCTCCTGGTTTATTGTTTGTCTGTTTTGATGTCGCTAACAGATTGTCTGGAGATAATGTTATTAAATTCTAAATTAACTTGTGTAGTTGGGCACAACTGCCTTAATTGGCCCTGTGACTCTCACTGTGATCTCCACAACTGTTCTTAATGTTAAGCAGTGAGATAAGCACGCACACATCTATAGCAGCTGGTTTGTGTTTACTTCTTGGGAGAATCATTAGTCATCTTATAATAAGAGTATAATTTTGAATCTAAAGTCAGTGTAACTTATTTTCTTTAGAAGCCTTTCCAAAAAGAGCAAGTGCTGTAGTTTAGCAATCACAGAAGTTGCCTATAGAAATGTGGAAATTCCAGGTGAAGTGTAAATCGTGTAAGTTTACGTTTGGGGGCATTAAGAGATCATTAGATGCAAAATGTTTGAGAATGTTGTCAGGTATCCTCTTTGGGCTTGCTCTTTGCCTTTCCTGGTATGTGATCAACATCGAACACTAGATGGTGCTCAGGTGCTTTAGGACTGGTGCTTACTGCCACAAGTTGCTAAATGCGAATACATGTGGTTGGTAGAGTTACTAACAGTAAGCAGAGTTCTGACTTATATCTCTAGTGTATACTTCATGTACTCTTGTCTTGGGGCTAAAGTTAGCAAGATGACACTGAATTTGTTTCCAAGCTAGTGAAGATAATAAAAAAAAATGAAATAAGCAGTTTTGTTTCAAGTAATTTCTGGTACAGACCTGGATTTTTAGCCACTGAGAGGCTGGAAACCCTGCTCAGCTTCCTTCTGCCCCATCCTATCATTGACATTTACCTGTTGGAACTGTGAAAACCTAAAATAGAGGCCGCTGTTTGCTAAAGCATGATTGCTCCTGTGCATTTATACATGCTAGCTGATCTGTATGCACAAATCTGTCTCTGCAGTTATGTCTGCTTTCTCATATGGAAATTCTGCCCTGAGCATGAATATTTAAACATTCTGGAGCTCTTGTTACAGTAGAAATGTACAGTGTTCACAATCAGCTGACTAAAGTGTGTCTCCCCTTGGGTATGAACAGCACCTATTCCTCTACTTCTCCCTCTTTCTTGACAAGTTTCTTTTTCTGGAGCAAGAGCTGTGGAACATCTTTGGGTTTTTTCCTCCCTGCCCTGTTAGCCAATCTGTGTGTCTGCTATCTTCTCATTGAATATATGCATACTGTGGCACTAATTAATTCGAATGCATTTAGTCATTTTTCTCTGTGCTGAAAACTGAGACTTGCATACTGAAGTTCAAAAGAACTTGTCCAGACTCCTGACATGCTGTCAGTCCAAGAAATGACTGAAACTTCTCCCCACTGAGACCTGAAACAATTCCTGGCACACCTTGCCATTCTCTAGTTACAGCAATGTATGGTGGGATGCTGAGCCCTCACAGTCCTGAAGGCTGGATCCAGCTTGGGTTTCCCTCCACTCATTGCTCTGGGTGGCTGTAAGGTGTTTGGTAGAAGCGCCGCGTGTGCTGTCCACAGCTGCTTTTTTCCTGTGTGCTCTAAGGGGGAGGTGGGCGTAGGGGCATCTTGTGCCAGAAGGAGCCTTGCTGTGTGCCAGTCTGAGATGTGAAGCTTTTAGTTCAACATGTACTTGTTTGAAACTGAGCCATTCTACCATTGTAATGCAGCATTTCATCCTGAAGCACAGTCTGCTAGGTGAAAATTAATTAATTTTTTTTACAGATTTCATTTTGTATATCTGTTGGTTGGGTTTGACTGACCAATGTTGCTGTTTGACAGCTCACAACTGCTTGCTATGTTAAGCAGTTTTCTTTCCACTCTGGTCACATTTTTGGGTGGCAGCTGGGACCTGATCACAGATGAGAACGTAATTTGCAAGCAGCGTGCTGTCTTTGAAATAAGCAGGGTAGCTGTAGAGGAGGATATCTTAAATATTTAATTTTCTTTCTTTCTCTTTTGTCTAG
Seq C2 exon
GAACCTGCCCATGATTTTGAACTGGGTGAAAGCACAGAAACCAGGTGTGATGGGCGTTAACATAATTACATCCGACTTTGTGGAGCTGGTTGATTTTGCTGCTACAGTTATTGCATTAAATGACCTCCTTCTAGAAGAGGATGATTCTTCAAGTAAATCCTGAATGCTGTGTCCCACTTGTACTTATCAGTGAAGATCTTTCAACTATGCTCAACTTTTAAAGTGAAACCTACTGTAATCAGTTAATTTAAAACAAAGTTTTCCAGAGGAAATGTGGTTTAAAAATTAAGTTGTGTACAGGAGGTTCTTTTCTCCTCAGGCTCTGTGGATCTGAGTGGAACACAGAGTACCGGCTGAGTGCTGCTGCATGTCTTTTTGTGGCTGCATGTTTGACTAAGTTATGCACACATCTGTTGCAGTACACAGTGTTTTGTGCCTGCCAACAAGAGGCTGGCCTCTGAAGCAGATGTACCCACTTACTGTACGTATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015375:ENSGALT00000024806:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PD(4.3=7.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]