RnoINT0113451 @ rn6
Intron Retention
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91468563-91475845:-
Coord C1 exon
chr10:91475464-91475845
Coord A exon
chr10:91468846-91475463
Coord C2 exon
chr10:91468563-91468845
Length
6618 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCATTACTTTTTTCTTGTAGAAA
3' ss Score
9.01
Exon sequences
Seq C1 exon
GGTGTTGTCGGAATTCAGCAAAGCCCAGGTAAATTCTGCACCAAGCAGCGGACCAAGCCAAGAGTCAGACACCCCCATGTTCCAGACCCCCCTCTCCCTCCACAGCCTAGCTAACAGCACACACCTGCTCTTTGAAGGATCTGAAGAGCCCTTTCCTGCCCATACATCCTCTGGGACTTCAAGTGGCCACAAGCATCAGCCCCAGGAGAGTCCAGACATGCAGCCGCTAGGCACTGCCCAAGCTGGCCCTGCTGGGAGCACTTCAGACCAGCAGCCATCTAGTCCCGTGGCCGGAGCAGCTGACCAAGGAAGTGAGCCTTGGAAGGCCCTGGAATATGGCAGAGTTGGACCGAAGCTTGTGGTTTCCTCTCCTACGAGTCCG
Seq A exon
GTGAGTGTGAAGCTGTTCAGGGAAGTCTCGGAAATTACTCTGAGCTGAAGTTTGCACATCTGGAGCCTGAGTGGTTCTGCCAGCCTATGAGCATGCCTGTCCCTGAGTGGGCAGTATTAATAGCATGGCGATGTGAACTAATGTGTCTGGGTGTCGGAGGTGGAGATGAGTCACGGTTTACACTGATTGAGTCCCGTAAATATTTCCCCTTGTCTTCATAACCAATCCATGAAAACGTGACCCCCATCTGATACCACACTCTGCTTAGATTTTTATTGTTTTTTATGATGGGTCACACTATGTAGTCCAGGTTGGTCTTGAACTCACATTGTATCCCAGGTTGGCCTCTGACGGTGTGATCTTTCAATACTGCCTCGGTCTCCCAAGTGTTGGCGTTACAGGCAGGCGCAACACTGTTCCAATCTCAGTTCTGAACTGCCACCGTTCATGAGTTTACACTCTTGGAGAAGAGTGCCTGAGACTTGACTTTCTTTTTAATACTTAGAATCAAATTTTCATAAAATCCTGGCTATGAAATACTTATTTTTTTAACACGAACCAGTTTGTGAACATTGTGGTCAGATGTGGCAGTCACTACACCAACAGTGGCTGTTGGGTACCCATATGTCAGGTCCCCAGATGGTCATGGTCATGCATACCTAGAATCTCAGTGCTCTGCGGTAAAAGCAGAAAGATGGTGAATTGAAGGCTCCAGAGTGAGATGCTGTTTCAAAAACAGAGAGAAAAATGTGGCCAATCTAGATTAAGATAGCACAGTTAAGTTGACTTACTGGGGTATAATTCACCCACCATATAGGAGTGTAAGTCAGTGCTTTTTAGTTTGCTTGGGTTATATAGCTATCACTACAATCTAATCTTAGAACATTTCAATCCCCCATGTAAAGAAACATTGTTAGCAGTCATTCAACTCAACCTCAGATAATCACTGTTTGGTCTCAATAGATTTGTCCTGGAAAAGTCATAGAAACGGGACTAAATAACATGTTTGGGGGTTGGCTTCAGTTATTTGTGCACATACATGTATATGTGGAGGCCAGAGGTACGCTGCTTCATCCATATCTGTACATGGGTGTTGGGGGTCCTAAGTTAGGTCCTCACCTTTGTTGGAAGCATTTTACTGACTGAGCCATCCCCTGTGCCCCTAAGCATGGTATTTTATAACTTGAGTGTGGTGGCTCATGCCTGTTATCCTAGCACATAGGAGGCAGAGGCAGGAAGAAGGACAGCAAAAGGTTCACCCATGTTACGACATGTATTAGTTCTTCATCCCGGTTACTGCTGAGGAATAAATAGCCCATGGTATTTTTCATTGTGTGACTAAGTCATGTGTTGATGGACATTTGAACTGTTAACACTTATTGGTTATTACAAATAATGTCATAAATATAGTGTACAAGATTTCATACGGGCATATGTTTTTAATTCTCTTAGACACATAAAATTCTATTAGAATTTTTGGATCATATAGTAACTCTATATTTAACATTTTGTGGAGCTGCCAAATTGTTTTCCAAAGCAGCTGCCCTAGTTTAAGTCTCCACTGATGTATTTTCCAGCATCCTTACCAACAGTTGTAATTACCTAGTTTCAAAGGAGTCTATTATTATAGCCGTCCTGGTGGATGAGAAGTGCTAGTTCGTAGTGGTTTTATTCTATGTGCTTCTGGTGATTAAGGAATGCCTTTTCATTTGCTTGAATAAGGCCATTTTATCTTTTGTGAGACACCATCACATTTTATTTTGTTTTAATTTTTATTTTATGTGTATGGATGTTTTGTATACAGATGTGTATGTGTACCACAAGTGTCAGAAGAGGACACTGGATCCCCTGGAACCAGAGTTACATACAAATGGTGTGAGCTGCCGTTGTGGGTGCTGGGAATCAAACCAGGGTCCTCTGAAAAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCTAACCTATTCTTGAGTTGAATTCCGGTGATTTCTTTTTCTTCCTGAATTTTTAAGATAGAGTCTCTTGTAGACTATGCCAGCCTCAGACTGGCCATGTACCGAGCCTAGAATGACTTTACATTTCTGGTTCTCTTGCTTTTACTCCCTATAATTGATGTGTAGCAGTCAGCTTGTCGTTCATTGATTGATTAATTGATTGATTGATTGAGTGAGTGAGTGAGTGATAAGGAATGTGCAGATGTATGTGTGGCCACTTGAGTGTGCTACAGCACACAGATGGAGGTCAGAGGACATCTTCTGGGGACCAGTTATGTATGTCCTTCCACCATGTGATTTCTGGGTATCAATCTCAGATCACAAGGCTTGTCACTTACCCACTGATCTGCCTCCCTGGATCCAATTTATATTTTTCCATGTGAACATGTGGTTGATCTAGCTCAGTACACAGAATATGACTATGATGAATACCATGTCTGTATAACAACTGGGTCAGATTCTCTGTTTTTACCACTCTGAAGATGGTTCCAGATCGACTTCTGGAAGATGCTTTTTATAAGCCCTTGGAGAGTCTCTAGGCAGTGGTGAAGCTGTCCTGAGGCTTAGGGGGCCCACAGCTTCTGCCTCAAACTGCAGAGAGAAGGATGCTTTTTAAGAGGTGGCTGCCTACGTCCCACCTCGGCTCCCAAGTGTGGCCTCGACCATGCTGACCAAATTCACCCTTACCCCCAATAGAGCTTCTGCTTTTTGGTCTCAGACACAGTACTTTGTCAGGGTCCTGGAACTGATGGGTCAGGGTAGCTAACTTGTCAACAGAATTCTTCCTCCATCCACAGTTTTAACCTTGAGCTTCCTATCTGCTCCCTACATGGGGCAAGTTCCTACATCATCCGGCGTTTACAGTGGCTGTCCCCTGTGTCCTTCCTGACAGGCGCCTGTGCTCAGTACTGAGTGCTGTCACAGCCTCCAACCCACAGGTCTAAAGAGCACCGTCCGAGACCGTCCGGCTTTCTGTTCTACCTTATGTTTAGCATTCATCACCCCTCCTTAGCTGTCTTTGATACTGATGGGGAAGTCTAGTCACCATCAGCTTTTTAAGTCCTGAGAACCATTCAGTCTTTCTTTTTTCAAAAGTTTTCTTTGTAAAGCATTAACTGTGAGCCAAGCACCTGTGATAGGTGCTAGGGATACAGCAATGAAACAGGACAGACAAGAGCCCTGGCCTTTGGGACAGTCACCAGATTAGAGAAGTAACAGTGCACATTATAATTACACTAGCACTGAGTACTATAGAGGAAGGGCACAGGGAGTGGGAGTTCCTGAGGTGACTAAGCCTGGCCTAGACACTGTCCCAACACTCTCTGCTTGTAGCATGGGGTCCCCTCCTGCAGTTGCACATGCAGGCATAATGAGAACAGTGAACAGAAAGTCTGGTCCTTTGGAAAAATGGTCCAGAGACCATTATGTTCTTTAGCCATAGCCTCCTGACACCTAATGACGCAGGCAGAGGTCTGTTGACTTAGATCCCTAATGGCAGGTCTGCTCTGGTGTAGATCCCAGGTCAGCAGTGAGTTCCTCACAGTTTGAAGGAACCAAGCCACCAAATGTGGAAGAGTGCAGCAAGAGGCAAGAGAAAAGGAAAACAGAGGGTGATCATGGCATAGCCAAAATCTATTAGCTCAAGTATTCTTTCCCTACCTCCTCCACGAGGCAGATACATCCTCGGTGCTGTCTTAACACACACACTCTGCCTCTCACTGTTTGAGAGGAACAGAGCCTTCTGTACAGAGTCACCCCTCAGTGGCTGCTTTGGGGTCAAAGGACCCTGAATACTTCTTTAGTAGTCGTTTTCTTTTGAGTGGAGAGAGAAGCAAGTCTCCCTCTCCTGTGGATCCACAGTTGCCTCCACCCCTTCAGAACCTTCCATCCACCTTTGTTGTTTTACATTGAAGACACTTGATAGGGTCGGTCCTTGGGCTGGCAGGATGGCTCAAGGAGTCCGAGTACATGACATCCAAGTCTAGCAACCTGAATCAATCGCTGGAACCCAAATAAGGGTGGACAGAAGGAACTGACTCCAGAGTTGCTCACATACTTGTCCCTGAACACTCACACAGACTAGTAATGATGAAAACTGTCTCTTGTCTTCTGTGTCTCAGTGCCATGCATGTTTGCTTGACATTATCAAGGAAAATGGTAATTCACAACAGCCTTCTAGGATAGGGTGAGCAGAGATTATCACCAAATAGGGTAGTATGTTGTCTGGGCAGTGAGGGGAACTGAGCCGGGGGCCTGTAAGGCTCTCAGGTGGTGGCTGGTGGGATCCTGAGGAACAATGTCCTCTCCTACTAGGGCTTATACAGGGCAGGATCACTAGGTATGTGTGAGATCACCAGGATGGCCAAGTGACTCCTGGGCGCTATTTCTCATACCCATTTTCCTCAGGGAATCATCTGGGTCTTGGCCACTGAGACAGGCTTTGTTCAGACCAGTTTCACATGGTCCCTAATAGCCACCCTGCCCGCAAGCACAGCATCCTGTCCCTGGTAGAGGGAAGCACCTGACAACTCTGAAAGTCCCATGAAGAGCCCTGGGAGCCCAACTCTGGAAAGCTCCTCTGTGCCTGAGTCAAAACCAATCTCTCTTGGCTTCAGGAGTCTCGTCATATCTGAATTTTCAAACTGTCTAAACCAGCCCCTCTGACACAGCCGAAGCCTGAACCCTCCTCCCTGTCTGTATCAGCAGGGAGGCCAGTCTTGATTTAGGGGTTGGAAATAGCAATGTCAGAGCTAGAGTGGTAGCGCTTACCAGAGCAGTGGGGTGGGTGGGTCCTGCCTGTGTGACTCATTTCCTTTGAATAGACAGCCACTTAGTGCAGCCAGCCAGCTTCCTTGTCTCTGCCCTTCCATGTCTAGGCATAGATGGGCAGAGAGGGCTTATAACAGTGAAAAATAGGAACTAAACAATATTCTCATAGGCCTTCTGACTCCTGATCTCCCCAACTTCCCCTCAGTGAGCAGCTTCAGGCTCACATAGACCTATGAGGGTGGGGGAGCAGGATCTAGGGGCTTCAAAGACATGCAAAATATGGGGAACAGAATTAGAAGCAATAATTTAGGACTAAGCCCACACACCACACCTCCCTCACACCAGATCTCCAAGTCTAAAGAGCCTGAAGTGCTGGGACACCTGAATTTCCACCTGCAAGAGAATCAGGCTGCAGCCCTTCCTTACACCTTACACAGAAGCTGACTCAAAACAGCTCACAGAGATGTAAGAACTAATAAAACTCTTAGTAAAAACGTAGGAGCAAATCTTTGTGGCATTGGCTTCAGCAGTGGCTTCTGAGGCAAAAACAACAGGAACACAGGCACAGGAAAAGCTGGCTAAATTAAGCTTCAGAATAAAACATCTCAGGGCTCCAGAAGGCACCATTAAGAAGGAAAAGAGAAGAAGCTGGGCATGGTGGCTCGTGCCTGTGGCTTCTGCAGTCCCAGCACTTGAGAGGCAGAGGCAGGAGGTTCTTACAAAGCTGTCCGGGGCTTTGTAATGAGCTCTAGACCAACCATGGCTATAGACACTGTCTTAAAAGGAAAAGGAGGGAGAGAGATAAATAAAAAATAAAAGACAACACACAGAGTTAGAGAAATTATTGGTCAGTCAGGTAGCCTGGTGAGGGGCTGGTACCCAGAATCTGCTTGGAATCTTTATTGGTTTCCTAAAGTGGTTATAACAAAGTAGCATAAATCAGATGGCTTAAATGGGCGGCTGTGCATTCCTTACTGGTCCTGGGAACTGAGCCGAGAGCCAGATTCCTTCTTCAGACTGTGAAGAGTAATGGCTCCCATCTTCCTCTCGGTGCTTAGTATTCCTGGCACTGGCTTGTAGGTCCATTGCTCCAGTCCTTCCCTCCACCCTTCCATGTTTCTCCCCCACTTGACACTCTCCTCTGTGTGTGTGTCATCTCCTCTTGTTTTGAGCCAGGGTCTGGCCTGGAACTTACTGTGTAGACCAGGCTGCTGTACCGTAGAACTCACAGAGATCTTCCTGTCTCTGCCTCAAATTCTGGGATTAAAGGCATACGCCACTATGTCTGTCTCCTCTACTTATAAAAATATCAGTCCAATTGAATAAAGGGCTCACCCTGCTCCAGTACAAGGACATCTGAACTAGTTACTAGGGTTTACTAGTTAGTCAACCCTAACAACAAAACTATAAGCCCAATCAAAAATAAAAATCTAAAGAAAAGATCAAGATCTAATATGAAAAGATGTTCTCGTGCCTTTAGACATTAAGGAAAGGCAAATCCAAACCACAGTGAGACGGCACTTCACAGATCAGCATGGCAGGAAGACATAAGGACAGAGATTGGAGAGGTTAGAAGGAAACTGCGACGAGATGCTCAGCATGTAAATGAAGGTGTTCCACACAGTCCTGATAACTGATTTGGCCTCCAGAAGCCCCATACAGATGCAAAAGGAAAAGGAAAACTGACTAAAGTTGTCCTCTGACCTCCATGTGCATGCCCTCCCTCCCCCAGCAACATCAACCTTGTACATTGCTGATGTGAATGTAAAATGGGTAAAGTGGGCTGATTTTATATGTGAGTTGTAACAAAATATTTAACTCTTAAAAGATCACCTCATTACTTTTTTCTTGTAG
Seq C2 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCAAGGAGCATGCTCTGAAGAACACTTCAGATCTTTGCATATCTCCTCTGCAAGGGACTCCAGAGTTGAGGACTGCTCTCCACGGGCCGTTTTCTCAAGGACCAAGAAAGAGCTGCTCCCTGGGGGCCTTAGACAAAGCGTGTGTGTCCTCGCTGGACTACAGAAATGCCCAGACAGCTCCATCTCCAGCGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCATCGAAGGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521:ENSRNOT00000037147:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]