RnoINT0115398 @ rn6
Intron Retention
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11262213-11262769:+
Coord C1 exon
chr3:11262213-11262343
Coord A exon
chr3:11262344-11262673
Coord C2 exon
chr3:11262674-11262769
Length
330 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGG
5' ss Score
6.35
3' ss Seq
TCTGTTGACATCTTACACAGATA
3' ss Score
6.21
Exon sequences
Seq C1 exon
GGAGGGCTAGCCCGCATCACCCAAGGCCAGCCCCTAGAGGTGGCCTTTGGTTCGCAGGTCACTCTGAAGAGCGTCTCCGGCAAACCCTTGCCCTGCTGGCTTCATTCGCACAAGAACACCTATCCCATGAT
Seq A exon
GTAAGGAAAGTGACCATTTAATTCGCAATCACAAATGATTTGCTTTCTCCCAGTTCTTGCTAAGAGCTGTCATTTCCTGAGAGACAAAGGCAGCAGGGCCTTTGTGGTGTACTGGGTGGAACACTGGGCGGGCTGTGGCATGCTAGCCACGCCTCCTCCATGCCAGCCACGCCTCCTCCAGTGCATTGCAGCGCTGACAGTGGCTTTTCCATGTTCTCTGGCCCTGTACTGTTGGGTAGTACATCCTGCTGGGTGGGCTACAGAGACCAAGGCCACTCGAGGATCTTGGCTGCCCGCCTCAGGTGCCTTCTCTGTTGACATCTTACACAG
Seq C2 exon
ATATGAGAATGGCCGTGGCAGCTCCCACCAGCAACAGGTGACCTGTTATCCCTTCAAAGACATCAATAACTGGTGGATCGTCAAGGACCCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477:ENSRNOT00000015214:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0281514=MIR=PU(6.2=25.0)
A:
NA
C2:
PF0281514=MIR=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGCCCGCATCACCCAA
R:
CGTCCAGGGTCCTTGACGATC
Band lengths:
222-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]