RnoINT0115408 @ rn6
Intron Retention
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11254774-11257548:+
Coord C1 exon
chr3:11254774-11254925
Coord A exon
chr3:11254926-11257441
Coord C2 exon
chr3:11257442-11257548
Length
2516 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
GGTTTTGTGTTTGTTTATAGTTT
3' ss Score
7
Exon sequences
Seq C1 exon
GGTGTCCTCCCGAGCTTGCTTTTCTGCAAAATGTTGAGATTTTTGAAACGGCCTCTAGTGGTGACTATTGACATCAATTTGAATTTGGTGGCTCTGACTGTCCTGGGACTACTTACCCGGTTATGGCAACTCTCCTACCCTCGGGCTGTGGT
Seq A exon
GTAAGTAGAGGTGGGGGAGGAGAGTAAAAGATCCAAGAAGCAGTGCAATTAGTGATGTGAATCACCTTGCTATACAGTGCAAAGGAGAAAGATTCTGGGCCTCTTGGTGATGGGTGTTTTAGCAGTGCATTGCTCAGGACTCTCTAGAGTAACGACTTAAGAATAACACTCTATGCATGTGTGTGTGTATGATTTATTGGAACTACAACTTACTGACTGCAGTCCAGCTAATCCAACAATAGCTGGCAGTGAATGGAAAGTCCAGGAATCCAGTAGTTGCCGGGTCCACAAGACTGGAAGTCTCAGCTGGTCTTCAGTATTCTCTGGAATCTCAAAAAAGTAAGGCTCTAGTGCCAGTAAAGGAATGGACTTGCTAGCAAGGCAAGGGCAAGGCTCAGAGCAAAAACTTCCTACTTCTGTGTCTTTACATAGACTTTTCAGCAGAAGATGTGGCCCAGATTAAAGGTGTGTCTTCCCACCTCAAGATCTGGATTAATCCTGTGTGTCTTCCCACCTCAAAGGTCCAAACTAGAAGTGGATTCACCTACCTTAACCAAGCAAAAGATCTCTCATAGATGTACACTTCTGGATTGTAGTTCATTCCAGATGTGGTCAAGGTGAAACCAGAAATAGTCATCACAAGCAGTGTAGGTGTGGGACCCGTTTTTCCCCCAGAACAACCCCTGGAGTATAAACATTTTAGGGCTTGCCCTGTAGGACTGCAGTAAGAAAGGCTTGGTCTGTCAGTTTCCTTATACAGTTGAAAGGTGGCAGTTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGAAAGAAAGGTGGCAGTTTGATGAATTGGTTCATAAGGGGAAATGTACTATTATAATTGAGAAGGTATATATTAACTAATACAGGTATTCTCTTTTACTTGTTTTTTTTTTTACATTATTTATTTATTATAGATGAATACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTCTGGAAGAGCAGTCAGCGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCCTCTCTTTTACTTGTTATAGGTGTCAAATATATACATGGATAGAATGATGGTGCCTCAGCAGCCCCTTATAGTAGATTAATTTGAAGCAAATCCTAGACATATTTATGATTAATTCACTATATACCTCTGAAAGATGAGAATTATTTAAGTGTGTGTGTGTGTCCATCCATCCATCCATCTGGGTGCATGTGCACATGTGTCTTCAGACCCAGAAGAGGGTGTCAGATCCTCTGGAGCTGAAGATCCAGGTCTTTGAGATCTGCCTGAGTTCTGAGACCTGAAGCCAGGTCCTCTGTAAAAGCAGCACATGCCTTAACCACTGAGCCATCTCTCCAGCTCCAAGATGAGGATTCTTGAAAACAAGGTAGTGCTGTCACACCTAAGACCTGATGTCTCATAATCTGCAGAAGCTTAGGTGCCGTTCTTCCTCCCCCATTCGCCACCATCAGATCTTTAGTCTGCTCCAGTCCACAGCTGTAGAAAGGTGCTAGTGGCCAGTGAGAATATAAGGTGGAATTAGCCTCAGGAGCTTGGCCGACCCATACCTGAGGCACAAGCTGTGGGGAGGGCCGGGGAAGAGGCTCAGTGGCTAAAGCACTTGCTATACACTCGTGAGGACCAGAGTTGAGATCCTAAGCGCACGCTCACATGCCATGTGGGTGGCGAGCTCCATCTGTAATCCCAGCGCACTGCCCGCTCAGCCAGGGAGTCCCTGCAGCAAGCCAGCCAGCCAGACTGACAAGCTCCAGACAGAATGAGTGTCTCAGTGTCACAGACACACTTCACACAGTGAACATGCATACACATAACCGCCTGCAGATCACATACACGTTCATACAGGGGGGAAAACACTAGAGAAAGAGGCTTTACCGAAGGCATGTATCCCCAGTGCTCCCTGGGCTTGGTGAATTCCCACTGCGTTCCTACGGGTTAAAATGGTACTATGTGTGTCTTAGTGTTTGGGGGACAGAAAACAATCAGAGCAAAGGATCTGACCATGGCTCTTCACTTACCTGAAGTCGGCTGGAAACCTGAGGTTTTATCTTCCTGCCTGTGCTTACAATTAAGATTTCGAAGGGGCTGGAGACACGGCTCGGTACTTACAAGCGCTGGTGGCTCTTACAGAGGACCCGGGTTCCATTCCCAGCATCTACTTGGGACTCACAACTGCCTCCAAATCCAGTTCCAGAGGACCTGATGCCCTCTTCTGCCTTCTGCGGACACTGCACTCATATGATGTACAGACATACCGGCAACATACCCATACACAAAAAATAAATATTTTTAAAGCTTGAATAACAGTTAAGTTTTCTAGTTGGATATAAAGGAGGTTTTGTGTTTGTTTATAG
Seq C2 exon
TTTTGATGAAGTGTATTACGGGCAGTACATCTCCTTTTACATGAAGCGTGTCTTCTTCCTGGATGACAGTGGACCACCGTTCGGCCATATGCTGCTAGCCTTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477:ENSRNOT00000015214:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=PU(23.9=41.2)
A:
NA
C2:
PF0236613=PMT=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]