RnoINT0118578 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5145166-5147724:-
Coord C1 exon
chr20:5145874-5147724
Coord A exon
chr20:5145435-5145873
Coord C2 exon
chr20:5145166-5145434
Length
439 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGATGCTCTGCCCTCTCTAGCCG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GAGCGAGACTCCTCCAGTACCTCCCCCCCCACCTTATCTGGCTAATTATCCAGGTTTCCCAGAGAATGGAACTCCTGGGCCCCCAATCTCGAGATTCCCTCTGGAAGAATCAGCTCCCCCAGGACCCCGTCCACTACCCTGGCCTCCAGGCAATGATGAGGCTGCCAAGATGCAAGCTCCACCACCCAAGAAGGAACCCCCCAAGGAGGAACCAGCACAGCTGTCCGGGCCAGAAGCAGGCAGAAAGCCTGCCCGAGGAGTTGGAGGTGGAGGCCAAGGCCCACCACCACCACGCAGAGAGAATCGCACTGAGACTCGCTGGGGCCCCCGGCCAGGCAGTTGTCGACGTGGCATCCCTCCAGAGGACCCTGGTGTCCCTCCTCGCCGAGCTGGGCCTATAAAGAAGCCACCACCCCCTGTGAAAGCAGATGAGCTGCCTCCTAAGTCCCTAGAACCAGGGGATGAAACCCCCAAGGCCCCAAAGCCAGATGCACTCAAGACAGCTAAGGGCAAGGTGGGCCCCAAAGAAACCCCAGCGGGTGGGAACCTGTCTCCTGCGCCTAGACTTCGAAGGGACTATTCCTATGAAAGAGTAGGCCCTACGTCTTGCCGTGGTCGGGGCAGAGGCGAGTATTTTGCCAGAGGAAGGGGTTTCCGGGGAACTTATGGGGGCCGGGGTCGGGGAGCCCGGAGCCGTGAATTCCGAAGTTACAGAGAGTTTCGAGGAGACGATGGACGAGGGGGTGGTTCAGGAGGAACAAACCACCCTTCTGCTCCCCGAGGCCGCACTGCCAGTGAGACACGAAGTGAGGGTTCAGAGTATGAAGAAATCCCCAAGAGACGTCGCCAGCGTGGCTCTGAAACAGGCAGTGAGACTCATGAGAGTGACCTGGCACCCTCTGACAAGGAAGCCCCTCCACCCAAGGAGGGAGTGCTAGCTCAGGTCCCTCTTGCCCCCCCACAACCAGGAGCTCCCCCATCACCAGCCCCAGCCCGATTCTCCACTGCCCGAGGTGGTCGTGTCTTCACTCCCAGAGGAGTGCCATCGCGCCGTGGCCGAGGTGGGGGTCGGCCCCCTCCTGTTTGCTCTGGCTGGAGCCCTCCAGCCAAGTCCCTGGTTCCAAAGAAACCTCCAACAGGTCCTTTGCCCCCAAATAAGGAGCCTTTGAAAGAGAAGCTGATCTCAGGGCCTCTGTCCCCCATGTCCCGAGCTGGCAACATGGGTGTGGGCATGGAAGACGGGGAGCGACCCCGGCGGAGGCGACATGGCAGGGCTCAGCAGCAGGACAAACCACCGCGTTTCCGAAGGCTGAAACAAGACCGGGAAAATGCTGCCAGAGGCACCGATGGCAAGCCCCCTCCCCTAACCCTTCCAGCCTCCACCCCTGCACCCACGGAGACGCTGGCCACAGTCGCAGCTCCCCCACCCCCTCGCCGCACAGCTGCTAAGTCTCCTGATCTGTCAAACCAGAACTCAGACCAAGCCAATGAGGAATGGGAGACTGCATCAGAGAGCAGCGACTTTGCCAGTGAGCGCCGGGGTGACAAGGAGACTCCCCCAGCAGCACTTATAACCTCTAAAGCTGTGGGGACTCCTGGGGGCAATTCAGGTGGGGCCGGACCAGGCATTTCAACCATGTCTCGTGGAGACCTGAGTCAGCGAGCCAAGGATCTGAGCAAGCGGAGCTTCTCCAGTCAGCGGCCAGGCATGGATCGTCAGAACCGGCGCCCAGGCGCTGGGGGCAAGACTGGCGGTGGTGGCAGTAGTGGAGGTGGTGGTGCAGGCCCTGGGGGACGGACTGGCCCAGGACGAGGGGATAAGAGGAGCTGGCCCTCTCCCAAAAACCGAAG
Seq A exon
GTGGGTAAGGGTAGATGGCTAAGTGTATTCTTATGGTTGCTGGGTTCAGGATGGGTACCAGGGAGTAGGAGTTTTATGAGTAAGTCAGGCCTCAGGAAGGGACTATGGAACCTCTATCTTGGTAGTTAGCTAGAGTTGGCAGTCCTCATATATGTTTGCAAACCCCTCAGGGCTTCCCCCTCAGCCCTTAACCCACTATCACCCACCCACCCACCGACGGGGTAGCAACACTATCAGTTCTGGTAAGCTGGAGGTAAGTGAGTGGGAATGAGTCCATCCCCAGAGGTGTGTGCTTTTTTCAGCACACCTTTGTAAACAGAAAACTTGGAAAGGTTTTCCCAGGAGAGAATAGGATGCCAGTGGAGAAGCTAGAAAGTAGATGTGACTTCTAGGGGTAAGAATTTAGTGAGCCCTGGAGCTGATGCTCTGCCCTCTCTAG
Seq C2 exon
CCGTCCTCCTGAGGAGCGACCTCCGGGACTTCCTCTGCCTCCGCCACCCCCCAGCAGTTCTGCTGTTTTCCGCCTGGACCAAGTTATCCACAGCAACCCTGCTGGCATCCAACAAGCTCTGGCCCAACTTAGCAGCCGCCAAGGAAATGTAACTGCACCAGGGGGGCACCCAAGGCCTAAGCCTGGGCCTCCCCAAGCCCCTCAGGGCTCCTCCCCTCGGCCCCCAACCCATTATGACCCCCCGAGGGCCAGCAACGCTATCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGATCTGAGCAAGCGGAG
R:
CCCCCTGGTGCAGTTACATTT
Band lengths:
351-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]