RnoINT0118694 @ rn6
Intron Retention
Gene
ENSRNOG00000005336 | Prss27
Description
serine protease 27 [Source:RGD Symbol;Acc:1303256]
Coordinates
chr10:13410899-13414549:+
Coord C1 exon
chr10:13410899-13411017
Coord A exon
chr10:13411018-13414522
Coord C2 exon
chr10:13414523-13414549
Length
3505 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCCCTTTTCTAATTTGCAGGGA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTAGCACTAGGGAGAGCTTCTGTCACTGCTGACCAGGACTCAAACGGCCACCAAACCAGAGACCATGAGGCAGCCCCACATCACTGCCCTGCTGCTGTTGCCGCTGCTGCTGAGATCTG
Seq A exon
GTGAGTTGCAGTGTTGGGGCAGACAGCCCTGCTGCCATCTTTCTCTGTAGGGACCCCTCTGTTCTGCTCTGACTTCCATTGGAGACCCCCCAATCCCTGCTCCTGTCTGAGTCTGAAAGGAACCTTCTCTTCCCAGAGAATACACTCAGTTCTCAAATATTCCACCTCAAGGACCTGGCTGGGGAAAGGGCACTGTGGGAAGGTCTGGCAGAGTATGTGGCTGAGGCCTTTGAGAGGACCCCCAAGGCAGGGGCTTGGCTAGAGTCACACTACCATCTTCCCAGACTCTCACTGTGTGCCATGCTCTGAGCTTGGGGCTCCCCTAGAAGCCGCTCTTCCCATTCTACAGATGATAGAGCCTCTACACCTTAGGATTTGAACCTAGGCCTGCAGACTTCCAAGTCCCTAGGCTCATGTGAATTGTGCTTGCCCTCTGAGACTAGGAGACTTCAGCCAGATTCTGGAGGCTCGACAGAGGGCTAGGGACAAGAGCTGCAAGTCGCAGAGGGTCCCAGCTCCTGCCTTGAGAAGGAGAAGCAGACGCCCCTGTCCATTGTGAGCAGGGGTCAGCAAGTTCTAGTCAGGTGCTCTGCCTACAAGGTCCTTTTCTGTGGGCTGGGCTCCTCTCAACTAGGGAAACTCTCCCACATTCCTGGGCCAGATGGGCCAGCTCAGCAGCCAGCATGCTTCCGTGTCCTCACTTCACCTCCCTGGGCCAGCCCAAGTTACACCAGACCATGTCTCAGCCGGGGCTCTGGGGTTAGGAGGACATTCGTGGGCATCTCTGTGGGGATGCCCCTACTTCCCCCGGTGTCGAGGAATGTTTCTGTCCATGGCCTCTAGCAGCAAGAATGATAGCATTGAAAGCCCATCTCCATTGGGTGTGACACCGTGCTGGCTCCCGTGGGTGGATCAATGGAGGTCACTGCCAAAGCACAAAGCATCCTGCCTTTGGCTCACAAACTGCTGTATCCTGAGGCTGGACCCCCAGGTGACATGCTCACTTTAGCCCAGGGTGACCAGCACCCCAGTAGGCTGCTCTCGCCTTTTCTCAGCCACTCCTATTGGGGGTCCAGGACGGACACAGACTGTCCTTAAGACTCGTAGAGCCTGGGAGCCTCAGCCTGAAGGACTAAGCTGCAGCAGAGACAACGTGAGACGGGACTGGCTGGAAGGAGAATGCATAGAAGGCTCTTGCAAGTTCCAGGAGGAAGGAGGAGGAGGCTTGCAGTGGATCTGTGCCCTTGAGGTCAGAGAGCAGCGAGGCAGTATTGCAAGCTGGCTCTCTGGGCCTGGAGAGATCAGTTCCAACTGAGTTCTAACAAGACAGCCGCTCTCTTTGCTCACGTTTGCACTTTCGTTTTATATTATCTTAAGATTTTATTTTTATTTATATGTATCCCTCTGTCGGTCTCTGTCTCTTTGTCTCTCTGTCTCTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAGTGAAGGTTGTTTACCTGTGGAGACCAGAGGGGTTGCTGGATCCCCTTGGTGCTGGGAACTGAACTGGGATCCTCTGTAAAAGCCAGAGATGCTCTTAACCAACAAGCCATCTCCCCAGCCCTTTATTTACTTATGGATATTTTTTTACTTGTATGAATGCTTTATTTGCATGTTTGTGTGTGCGAGGTGTGCACGTAGTGCAGAAGAGGGTATCAGATCTGCTGGAACTGGAGTTACAGACGTGGGTGCTAGGCCCTGAACCCAGGTCCTCTGCTAGGACACTAAGTGCTCTCAACCACCCAGGCGCTTCATTTACGTAGGGACAAGGTCTTACAACATTGCTTCAATCTCATTGTGTAGCTCAGTCTGGCTTTAAACGCCAGCCAATCCTTCTGCCTCAGCCTCTTGAGTGGTGAGCACTGGGTAACGGCTGTGATGGACATACACTATGCATTTCGTTGTAAAGGATACCTTGTGAACACGAGCTCATAAGTACACAAGCCAGAAGTGCAGAGCACAAACCCTGCTTCCCACGACATAGGCCCTATCTGCTTGACATCCTGCTTTGAGAAACATCTGGTCCGGTCCCCAGGAGTCGCTACCTCTTGTTCCTCTGTGTTCTGGTTCCTCTGGGTTTCTGGCACTGTGATAAAATATGACAAAATGTAACCTGGGGTGGGTGTGGGAGGTAAAGGGCTTATTTTAGCTCACTCTTCCTGGTGACAATCCATCATTATAGGGCAACAGGAACCTGAAACAGTCGGACACGTCCAGAGTGGGGATAAATGAATTCATGTATATTCACTTGCTTATGTTTGCTCAGTTCAGGACCAACCCAACCCCTGTGCCTAGGGAATGGTGCCATCCACAGTGGGTTGGGTCTTCCTACATCAATTAACTTAAGATAAACACCCCCCCCCAAGGGTAAGCCCACAGGCCGACCCAATGGAGATGATCCTATATTGAGACTGTTCCCAGCCGATTCTAGTTTATACGCAGCTAATCACCCTGTCCACACCTGAACCCTATCCCATCACCAAGCCCACATTCTGGATCTTGGCTCCCTGTAGCACTGCAAGCTGCATGACTGGGAGCCTCAGAGGGAAGACAAGTCCAGTGACATCCTTAAGGGCTCTGGGCACTGCGGGTCATGTATGGCTCAGCATAGCCATTTGCTGTCCCTTTTGACCCTCAGCATCCTAGAATGGTTTTCTTTTCATCCATCCCTCTGGGCTCAAGTGGTGGGGCTTGGAGAAAATGTAACTAAGAAGGAGGAGGGACCTGACCATGCTGAAACCTCATCCAGTTCCCCAGACCTACCCAAGGGATCAGTAAGTAGGAGAATACAGCTAAAGGTCTGGGAGAATCTGAGGCTGGAATGAAGGTTATAGAGGTTGAGCTAAGGGGGATGAACCCTAGGAATGGACCCCATTCCAATTCCCTGAGAGCTGTGCTATCCTTTTCTCTGTTTGTCTCCCCACCTTGATGGTGGTCCAGAGGAGATGGTCAATGTGGTCATACTTGGCAACAGGGAAGTATAGTCCTGGGAGGCGGTCGCTAAGCCAACTCTACTCCCCTGAGAGCAGAGAGTGATCATGGATGTCTGGACCTCAGTTGGATTTAGAGAGAAGAAGACTTGATCATTCTGAAAGACTGAGAGGAGTCCTGGTGGACAATCTCTGGAGGCAACCTCCAGGGTTTCCTCTGTTGTCCAGAGCTGAGCCTTCAGAGAGTAAAGACAGACAGACTCTACATCTCTAGGATTTGAGGCCCATGCACTATCCGCACCTCTGTACTTCAAGACAAATACTGGGGTGCAAGGTGGAAGAAGAGGTCCCTGTGTGCACAAGAAGGGTGTCAGCCTGCCCCGAGCAGGAGGTCAATCCACTAGCTCCCCTGGTTGTCTCTCCTTGTCCTCAGTGGACAGGGACCTGCGATGAGGCAGGGGCAGGGAGGAACAGACCTTGGCTTGGTAAAGTTGGCTGATGACCCCCCCCCTTTTCTAATTTGCAG
Seq C2 exon
GGACTGAAGGGGCCGAGGCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005336:ENSRNOT00000007392:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]