BtaINT0118726 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040394 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr25:2130392-2133828:-
Coord C1 exon
chr25:2133780-2133828
Coord A exon
chr25:2130425-2133779
Coord C2 exon
chr25:2130392-2130424
Length
3355 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ATCACCCTCTTTTTTCTCATTTT
3' ss Score
0.51
Exon sequences
Seq C1 exon
ATGAGGCAGGTGCTAGCCGCGGTCCTGCTCCTGCTGCTGCTGCGGTCCG
Seq A exon
GTGAGTCCTACAGATTGCAGGAGAGTCCTACAGGTCCTACAGGTCTGTCCTGCCAGCAGCTGTAGCCAGTCCCCACTCCCTGGCTAGGCTTGGGGCTGCAGCACTGGCCTCCTCTTCTTCTCGCAGGAGGAAGGTTCCAGACATCCCACCTGGGGGAGTGAAGTGGGGAAGGCAGCGTGGGTGCAGGCCTGCGAGGGCCCTGAGGCAGTGACCCGGGCAGGATCCACCCCCACCCGCACCCCCACCCCCGCTCCCACTGCCTTGGGCAAGCAGGGCCAAGCTCTGGGCTTGGCACTCCGCTTCCTCTCGTCTTGGTCTCTCCCGTCTCCAAGGCACAAGCACAGGGCTGCCTGGGTGCAGGATCTGAACTCAAGACTGCTGGCCTCCAGCCCAGGGCCAGTGTCCGCAAGGCCAGGAAGTGTGGCCGAGCGTGGCCTGAGCCAGGGAGCCACGGAAGGCTGGGGGCGCTTAGCAGGGCATGGGGGAGGGGTGCAGGCAGGAGGAGACGGGGGCGGGGGGCGGCTCCTGCACCCGGGCCTCTCTCCCAGGCCCCAGTGAGGGTGAGCAGGTGTCAGCCAGGGGCCTCACCTGCCAGGCCCCTCCCAGCTGGGCAGGCTGTTCTCTGCTGGAGAAACTCTCATGCATTCCTGGGCCCGCCTGGCCTGCCCAGCCACCTCCTCACTTCCGTGTCCTCAAGTCACCTCTCAGGGCCCGGCCGTCAGCCTGGGCTGCAGCCCTGCCGGGGCTCCAGGCTTCCCACAGGGGAGGAGGCACCTCGGTGGGGAGGCCCCAGACTCCTTGGGTTCCGCAGGGCCCCCCAGGCCTCGCTGCCCTGCCTTCCTCCCCTGGCACCAGGATAACAGCGTTCTTTGAGGGAGCTCATCTCTGCCAGGGTGTGTAACCCTGTGATTACTCCTGGTGGGTAGAGTAATCGAGGTCATTGCCAAAGTGCAAACAGCGGCCTGCACTTGGCTCTCCAATAGCTGACACCAGAGGCCTGAACTCCTTCAGCACCATCTTGGCCTCTCATCTCTGGCTGTTCCCCCTAAAGCCTTGGGCCTCTCCTGCCTCCACAACCAGATACAGGAGCAGAAGGGCCCTGGATCCAGAGGAGGGGGCTGACACCCCGCTGGCTTACCCAGCCCCAACAGGACGCCCACCCTGCCCAGCCTGGGTCTCCACATCGCTCTTCCCCAGGAAGTCCTGCTCCCACTGTCCCACTTATATATTCCCTGGGCTCAGGCTCCCAGGATGTGGGCCCTGCTTCCACAGAGATCCTGAGCTCATGGGTGAGATGAGATGAGATGACAATTCCACCCCCAGGGCAAGGTGGGCAGAGCTCTGTGGGGCCAAGTGGGAAGACAGAAAGCTCAGGAAAGGGAGCCAGGCTGCCCAGACAGTACAATCAAGGAGGGCTGCCTGGAGGAGGGGGAAGAATTTCAGTTAGGGTTAGCACTCTGGATTAGGATCTGGATTAGCACTCTCTAGAATCTGGATTTAGACCCAGGAGGAAAGCGGTGCTGTGAACAAACATTCAGAGGCAGGAAAAGTGAAGTCAAAGTCTCTTAGTCGGGTCTGATTCTTTGTGACCCCGGGACTGTAGACCACCAGGCTCCTCTGTCCGTGGAATTCTCCAGGAAAGAATACTGGAGTGGATAGCCATTCCCTTCTCCAGGGGATCTTCCCAACCCAGTGATCGAACCTGGTTCTCCTTCATCACAGATGGATTCTTTACCATCTGAGCCACCAGGGAAGCTTCAGAGGCCGGGGGCTCAGTCCAAACAAGAAGCCGAGGTGCATCAGGCTGGGATGCAGAAGCCTGAAGAGCCTCAATGGAAGGGTCTGCTAGGCAGGGTGTGAGTGCCCTTGATCCCAGGCGTGGACAGTGGATCCACACACAGGAGCGGGGATGGCTGTGGGGAGAACCTGGGCAAGGCTCTGGGAAAGCCCCACAGGGAGGGAAAAAGCCAGCCGGGGCGTTTCAGCTTCGTGCAAGAAGCAAGAGCGCAGGGTCTGGGGTTGTCAATCTGACTAAATCAGATTATACTAAGACGAGGGGCTGGAGGGAATGTCCGCCTGGGGCACGTGTGCATTTTTAAAGGGCCCCTTGTTGACACAATCAGTGTCTGGGCAGATGTCTTGCTGGCCTGGGCTGACTGCCCTCACCCCCACGCATCTGTTGGCGCCTCTACCTGGAAGAGTGGCTGGTCCTGCCTGTGCCTGCCCACTCCTCTTGGCCCATGCTCAGCACCCTCTGCAACTGCTTCATCATCCACCCCCCAGCACTGGAGAGTGTGCCCCTCAGCTGGAAGAATAGGGTCCTGTCAAAACCCCCAAGGTCACAGAGGGGTGTGGCTCAGTCCAGCCATTTCCTGCCCGGCCCCAGGGCCCCTCAGCCGCCTGGGACTGGTTACTGGGGCTGGGGTGTCGGGGGAGTGTGAAGTGGGAAGAGGCTGTCCTGACCCCCCAAGCTCTGATCAGATCCACCCCAGTGACCAGATCCATAAGCAGGGCTCTCTTTATGGGGTGGGTTACCTGGAGCTGCGCTGGCACTGGTTGAGACTGTTGGCCTGGCTGGGGTCTCCGAGCTGGAGTGGAGGGGCCTGTCAAGGCCAAGAGGCGGGCCCTGTGCCTTGTCCAGAAACTGGGGGACAGTGGTCCCGGGGAGAGGGGTCCACTTCCAAAGAGTGCCCCCCGCCCTTCGCCCCACTGTCCCTCACACGGGCAGGGGTGCTGGGCCCGGCAGGGCTCTTGGGGCCGCCTGTGAGCTTGGCGGAACACCTGAGGGGCTGGCACCTGGGAATCTGGGATCTTGGGAGGACTGATGCATGACCATCGTCTGGCCTCTCTACTCCCCTGAGATGAGTGAGACTCGAGTGGCTGGGCGGGCAGGCAGACGTGGAGCCTTGCTCACTTGTCTGGCCCCTTATCCCAGCCAGCCCCAGGCTGGAGGAGGGGGTTGGGGGGAGGCCCCACAGCCCCTTGGCTGAAGGCCACATCCTCCGCAGAGCTTCCAGATGAGGATGAGTGTGGGGTGTGGAGGGAAAGCCCTGGTGGGGTCCAGAAGAAGCCCTCTTGCCCCAAATGGGAGGGTCAAGCCCTGACGGGGTCCCCTCCCTGGCCTTTCTGATTGGTCCTGGCCCACAGCCTGGCCTGTGCACACCATGGGGGCACATGGGGGACCTGTGGCTGAAGGCTGCCAGCCTCTCCTGCCAGGTGCCCGGTGGACGGTCCTGCGGAGTCCACAGGAGGCTGGGTGTGCAGCAGAGGATGGGCTATGCTGACCAGTCGTTGGGGAGGGGAGGAGCAGACTGCAGCTTGGGCAAAGTTGGCTGATCACCCTCTTTTTTCTCAT
Seq C2 exon
TTTCAGGGACTCGGGGAGGCGAGGCACTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040394:ENSBTAT00000027417:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]