HsaINT0132958 @ hg38
Intron Retention
Gene
ENSG00000172382 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr16:2716500-2720215:-
Coord C1 exon
chr16:2720115-2720215
Coord A exon
chr16:2716527-2720114
Coord C2 exon
chr16:2716500-2716526
Length
3588 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CACCCTCTCCTCACTTCCAGGGT
3' ss Score
11.29
Exon sequences
Seq C1 exon
CCAACGCTTCTGCCACCGCCGACCACGGCCCTGCGCCCCAGCCAGGCCTGAGGACATGAGGCGGCCGGCGGCGGTGCCGCTCCTGCTGCTGCTGTGTTTTG
Seq A exon
GTGAGTCGTGAAGGTGCAGGGTCCTGGTGGTGCAGTCCCCCACCAGGCTCCGCTGCACTGCCTGGGGCTCCGGCTCAGCCCCCTACTCCCTGGGACAGGCTGGGGCTGTGGGACAGGCCATCATCCCTCCTGCCCCTGAGCAGGTGGGAAGGCTCCAGATGTGCCAAGTGGGGAGTCCAAAGTGGGGAGGCAGGGTGGGAGGTGTGCGCACAGGCCCCAGAGGACCCCACCGGCATAACTGGGCAGCACCTCCTCCCATGCCTCTCCGCGGGCACTGGTGTGCCAGCTCTGGCCAGGCTCCCTGCTTCCTGCCACCTCGGCCTCTCCCCCCATTCTCTAGGTGAGGACAGGGGCCTCCTACGTGCAGGATGTGAACTCAGGCTCCAAGTGCCTGGACCATCATACTCGGGGTGGGAGGGTGGCCGAGCCGAGGGCTGCTGCCTGTGCCCGGAAGCCCCAGCAGGCTGGCTGCAGGCTCAGTAGAGAGCTGGGGGCAGGGGGTGTAGGTGGCAGAGGGCCCTGTCTCCTGCTGACAGAGGAACCGGTGATGCGCCACCGTGCCCTCTCCCAGTCCTGGGTCAGGGACAGCAGGTGCCAGCCAGGGGGCCCCACCTGCCAGGCCCCTCCCTGCGGGCCGGGACACTCTCTGTCAGGGAAAACCTCTCACATTCCTGGGCTAGCCTAGCCAGTCTGGCAGCCACCACACTTCCCTGTCCTCAAGTCACCTCCCAGGGCTGGGTCAGGTCATCCCAGGCTGCAGCTTAGCCAGTACTCCAGGCTTCCTTGTTCTCCTGGGTGGGAGGGCACCAGTGGCCCCTCAGTGGCCCGGCCTCCCCCACCCCATGCCCCCAGTCTCCCAGCACAAGGATGGTGCCCTCTGAGCAAGCCATGTGCACAGGAGGTGGAAGGCTGTGACTGCCCCTGAGCGGGGTGAGGAACCAAGGTCATTGCCAAAACTCTTTGGCAATGAGTTTTGCAGTCGGTTCACTAACAGCTGTGACCAGAGGCTGGACTCCTGGACACGTCCTCACTCCCAGCCCGAGGGTGGCACTCCCACCAGGTCTCTGGCTGGTGGTACCCACTAAGCTTCACCATCCCCACCAGCTACCAGCGAATCACAGGCCCAGGCCCCAAACAATGCTCCTGACACCCCCGGCACCCCTGGCTGTTGCTTCCAGCCCCCACAGGGCGCCCACCCTGAAGGGCTCAGCTGTCCACATCCCCCATTTCCCATCAGCCCCCACAGCCACACTTGTGTCCATCCACACATTCCCTGAGATCAGGCCCCCCAGATGCAGCCCTTGCCTTCTCGGAGCTCCTGGGCTAAGATAAGACTTGATTCTGGCTCCAGGGTGATGTAGACAGAGCTCCCATCAGGACAGAGAGCTCAAGAGAGAGTATAGGGCTTCCAAGGTAGACAATGCAAGCAAGCAAGGAAGGCTTCCTGGAGGAGGCAGCATTCAGTTGGGCCTTGATCTCTAGATCACGATTAGGACTTGGCTGGGAGCGGTGGCTCACGCCTGTAATGCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGGGGCCAGGAGATCGAGACTATCCTGGCAAACATGGTGAAACCCCTCTCTACTAAAAATACAAAAAAATTAGCCGGGCTTGGTGGCGGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGGCTGGGCAACAGAGTGAGACTCCATCTTAAAAAAAAAAAAAAAAAAAAGACTAGGACTTATGGAGACTGGGGGAAGGGCATCCAGATTGTGGGGTGAGGGGAGCAAGCACTCAGAGACCAGAAGACTCTGCCTAAATGAGAAGTACAGGGCTACTTTAGGAAGGAAGGATCTGCATGGGGAGGAGGCATCGCTGAAGGGGCAGTGCTCAGGCAGGGAGCATGGAGACACAGCTCCTGCAGACTCCCAGAGAGCGAGAAGGCCTGACAGTGCGCGCCCTTCTGCAAGCAGGATCCTCAGGCTTGGAAGGAGCAAGGGGTCGGGGGGCCAGGGAATAACCCTCCCGGTAGTGTTTGCATTTTAAAGGGCACTTAATTAGCACAAATTAATGAGCAGAGCATCCAGGGCAGACTCTCCATTTCCCGTTGCCCCTGACCCCGCTTCTGCAGGGCACCCCTTTGCCTGCCCTGCACCTTCTCCACCTCCTCCTCCTGCCCATCCACAGCTGCCCCCTCGCCGCCCGCTGCCTTATCGTCCAGCAACCCCCGGGGTGTCTCTGCCCACCAGTGGTGTTGGGGAGGGTGCCCCCCAGACTGTGAGGCAGACAGAAAGGAAGAGGATGCCGTAAAAACCCTGGGGGTGCTTGGGCCCTCCATGGCCACTTCCTGTCCCCACAGCCCCTCAACTCCAGGGGACTGGTTATCTTTTCCGGGCAGAGTGAAGACATGGTCCATAGCAGCTGGCCCGGGCACCGGAAGGCACTGGGGGTTAAGGGGAAGCTGAGGGCCTAGGTGTGGGGAGGTGGCTGTTCTAACCCCTCCCCAGCTACGGGCGAATCTTGCCCCCACAGAATCAGACGCGTGGAGTGCAGGGGTGGTGAGAGGACTCTCTCAAGGCCAGGAAGTTCCAGGCTTTGCTACCCTGGGGCTGTACACTATGGTCCTGGCTGGGGTCTCCAAGCTGGGGTAGAGGCTCCAGTGTTTGGTTAAAGGCCCAGCAAGAGGCCCTTTGTGTCCTGGGGTGTGGGAGGCAATGGACAGCAGAAAATATGTTCCCATCCTTGGTTCCCCCGAACGACCCCATATCTTGCTTCTCTTCCGGGCCCCTCACTTTATCCGCTCCAAAGCCCCCTTGCACAGCCCAGCAGGGGGTCCTGGGCCTCGTCTGCCAAGCCTGCTGCATGCCTGGGAGAGGGGTCAGCTCTTGGGACTCTGGAATCTTGAGAAGGCTGATCCCTGGTGGCCAATGCAGACCACTGTACCTTCTCTACTCCCCTGAGGCCAGGGAGAAGCCTGTGGGGCTCGGGCCTCAGCCTCGGGACCAAAGTGAGACTTGGGGAAGGAGCTCATTCCGGAGCAGACTGTGAGAGAGCCCTGGGCAGCTCAAATGTAGAGACAGCTCCCGGGCCTCTTCCGCTCTGAGCTGTTCCGGGAGGAAAGGCCAACCTTACAGTGCCAGGGCTGGAGGCTGGACCCTCCCCAGAAACTTCCAGACAAGGATGGGTGTGGAGTGTGGAGGGAGAGGACCCTTTCCAGGATGAGAAGGGGACATCTAGCCTGGGGATCCCTTCACTGGCATCTCCTGACCGGCTCCCCATGTGGCAAGGAGCATCCACCCTTGCAGATAAGCTGTGGCCCATGGGCCTGGGCCTGAGCATACGGCAGAGCCAGCCCTGGGGGGGAAACTGCAGGCCCTTGGGCTCTCCGGTGAGGTCCCTCTGTGGACTGTCCCTCTGGAGTCCTCAGGAGCTGGGGAGGGTCAGTGGAGAGGGGCTGCAGGGTTGGGGAGGGCAGGCCAGGCTGCAGCTGGCCTGGCTGATCACCCTCTCCTCACTTCCAG
Seq C2 exon
GGTCTCAGAGGGCCAAGGCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172382:ENST00000302641:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development