MmuINT0127431 @ mm10
Intron Retention
Gene
ENSMUSG00000050762 | Prss27
Description
protease, serine 27 [Source:MGI Symbol;Acc:MGI:2450123]
Coordinates
chr17:24038144-24042080:+
Coord C1 exon
chr17:24038144-24038361
Coord A exon
chr17:24038362-24042053
Coord C2 exon
chr17:24042054-24042080
Length
3692 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCCCTTTGCTTACTTGCAGGGA
3' ss Score
11.1
Exon sequences
Seq C1 exon
AAAGAGGAGCTGGGCAGGCAGGGTTGACAGGTTGGGCGGCATAGCCGAGCTGACACTCATCTCCAGCATAAAACCTCACTTCATGGAGCCTGAACCTCTGTAGTACTAAGGAGAGCTTCTGCCACCTCTGACCAGGACTCAAACGTCCACCAAGCCAGAGAACATGAGGCAGCCCCACATCGCTGCCCTGCTGCTGCTGCCGCTGCTGCTCAGATCTG
Seq A exon
GTGAGTTGCAGTGGGGGCGGGGGCGTCCTGCTGCCATCTCTCTCTGTAAGGGCCCCTCTGTTCTGCTCTGACTTCCACCGGAGCCCCCCCCCCCAGTCCCTGGGCCTGCCTGAGCCTAAAAGGAATCTTCTCTTCTCAGTGATGGGGTTCCCAGAGAATATACTCAGTTCCCAGATATTCCACCTCAGAGACCTGACTGGGGGAGGGGTGCTGTGGGAAGGTCTGGCAGAATATGTGGTCAAGGCCTTGAGAGGACCCCAAGGCAGGAGCTTGGCTAAAGCCACACCCCCATCAGGCTCTCACTGTGTGTCATGCTCTGAGCTAGAGGCCTCTCTTCCCATTCCACAGATGATAGAGCCTCTACACCTGTAAGATTAGAACCCAGGCCTGCAGACCTCCAAGTCCCTGGGCTTATGTGAATTGTGTTTGCTCTCTGAGCCTAAGAACTTTCAGAATCTGCCTGAGGCTCAGCAGAAAGCTGGGGACAAGAGCTGCAGGCTGCAGAGGGTCCCAGCTCCTGCCTTCAGAGGGAGAAGCAGCCCCTGTCCATTTTGCACAGGGGTCAGCAAGTTCTAGCCAGGTGCTCTGCCTACCATGTTTCCTGTGGGATGGGCTCCTCTCTACCAGGGAAACTCTCCCACATTCCTGGGCCAGATGGGCTAGCTCAGCAGCCAGCATGCTTCCGTGTCCTCACCTCACCTCCCTGGGCCAGGCCAAGTTACCCCAGGCCGTGTCTCAGTCAGGGCTGGGGTTAGGAAGACATCAGTGGGTATCTCTGTGGGGATGCCCCCCACCTCCCCCAAAGTCAAGGAATGTTCTTGTCCATGACCTTTAGCAGCAAGAAAGCCCATTTCCTTTGGGTGTGACACTGCTGGCTCCTGTGGGTGGATCAATCGAGGTCACTACCAAAGCAGAAACGGCAGTCTGCCCTTGGCTCACAAACTGCTGGAACCTGAGGCTGGACCCCTGGTGACATGCTCACTTCAGCCCAGGGTGACCAGCACCCCAGGAGTCCTCTGGCTGGTCTCACCTTTTCTCAGACCTTAGCTATTCCCACCAGGGATCCAGGATGGACATAGACTGCCCTTAGGACATGGAGAGACTGAAGGACCAAGCTGCAGCAGAGACAATGAGTGACAGAAGACTGGATGGAGGGAGAATGCACAGAAGGATCTTGCAAGTTCCAGGAGGGAGGAGGGGGAGGAGGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGGAGGTGGCTTGCAGAAGGAGGATCTGTGCCCTTGGCAATGTTGCAAGCTGGTTCTTGGGGCCTGGAGATCAGTTCCAGTTGAGTTCTAACAAGATGGGGACTGTCTTTGGTCATATTTTCATTTTACTTTATATTATTTTGAGATTTTATTTTTACTTTATATTATTTTAAGATTTTATTTTTATTTAATTTATCTCTCTGTTTCTGTATTTCTTTGTCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTTGTGTGTGTGTGTGTGTCTGTGCCTATGTGCTTGTGTGTTTAAGTGAAGGTAGTTTACCTGTGAGACCAGAAGGGGTTGCTGGACCCCTGGGTGCTGGGAACTGAACTAGGAATCTCTCTTAACCAACAAGCCATCTCTCCCGCGCTTTATTTATTTATGTTTATTTTTTACTTGTATGAATGCTTTATCTGCACGTATGCATGCATGCTATGTACATGCAGTGCCTATGGAGGCCATTAGAGGGCATCAGATCTGCGGGAACTGGAGTTACAGATGACCGTGAGTCACAACATGGGTGCTAGGACCTGAACTCAGGTCCCCTGCCAGGGCTCTCAACCATTAAGTCACTTCATTTATCCTGAGACAGGGTCTTACAACATTGCTTCGACTGGCCAAGCACTCATTGTGTAGCTCAGTCTGGCCTTAAACTCTAGGCAATCCCCCTGCCTCAGCTTCTTGAGTGGAGAGCACTGGGTAACAGCTATGACCCACTATATACTATGCTTTGCATTGTAAAGGGCACCTTATGAACATGTGCTCACAAACCACACAAGCCAGGAGTCCAGAGCACAATCCCTACTTCCCAAGAGCATCACATGTGACCCTATCTGCTTGATAACCTGCTTTGAGAAACATCTGCTCCTGCCCTCAGCAGTAGCTACCTCTTGTTCCTCTATGTTCTGGTTTCCTTGGGTTTCTGGCACTGTGATAAAATATCATGACAAAAAAGTAACCTGGGGGATAAAGGGCTTTGTTTTAGCTCGCTATTCCAGGTGGCAATCCATCATTTCAGGGCAACAGGAACCTGAAACAGCTGGTCACATCCAGAGTCAAGAGGAAATGAATATATGTATATTCACTTGCTTATGTTTAGCTCCGTTCAGAACCAACCCACCCCCTATGACTAGGGAATGGTGCCATCCACAGTGGGTTGGGTCTTCCTACATCAATTTACTTAAGATAACCGTCCACCACCCCATAGGTGTACCCACAAGCCGACCCAATGTAGATGATCCTCTATTGAGACTGTTCCTAGGTGACTCTAGCTTACAGCATGGTGACCACCACAGCCTGTCCACAACTGAACTCTACCCCATCATTAAGCCCACAGTCTGGATTTTGGCTCCCTGTAGCATTGCAAATGGCATGACTGGGAGCTAGCTCCACAGGAGGAGGAATCCTGTGACATCCTTAAGGGCTCTGGGCACCACAGGCCATGTATGGCTCAGCATGGCCATTTACTGTCCCTTTGACCCTCAGTATCCCAGAACGATTTTCTCTTTACCCCTCCCTCTGGGCTCAAGTAGTGGGGCTTAGAGAAAATCTGGCCAAGCAGGAGGAGAGACCTGACCATGCTGAAACCCCATCCAGTTCCCACAGACCTGCCCAAGGGATCAGTAACTGGGAGGGTACAGCTAAAGGTCTGGGGGTGCCTGGGCTTCAATCTAAGTCTGGAATGGAGTTTATGGAGGTCAGGTGAAGAGTGATGAACACTAGGAAATGGACCCCATGCCAGGTGCCCTTAGAGCTGCCCTATCCTCTTCTCTACATATGTCCTCACCTTGATGGTAGTCCAGTGGAGACAGTCCATGTAGCCACAGTTGGCAAGAGGGCTCAGGCCTCAGGAAGTACAGTCCTCTACAGTCCTGTGAGGTTGACCTTTAGTGGTTGTTAAGCCAACTCTACTCCCTTGAGAGCAGAGAGTGACCATGGGTGGCTGGACCTCAGTCAGACTTGGAGAGAAGTTGAAGAAGATCATTCTGAAAGACCGAGAGGAGACAAATCGGAGAGGATCCCTGATGGACAAGCTGTGGAAGCAGCCTCCGGGGTTTCCTCTGTCATTCAGAGCTGAGCCTTCAGAGAGTGAAGAGAGGGAGACAGACTCCACATCTCTAGAAGTTGAGGCCCATGCACTATCTGCACCTTCATACTTCAAGACAAAAACAGGGGTGCAAGGTGGAAGAAGAGATCCCTGTGTGGACAAAAAAAGTGTCAACCTGCTCCAAGCAGATCAAGCCACATGGCCATAGAACTAGCTTCCCTGGTTGCCCTTCCTTGTCATCAATGGACAGGGACCCTCTGATGAGGTAGGAGCAGGGAGTAACAGACCTTGGCTTGGTAAAGATGGCTGATGACCCCCTTTGCTTACTTGCAG
Seq C2 exon
GGACTGAAGGGGCCAGGACTCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050762:ENSMUST00000059482:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types