RnoINT0118703 @ rn6
Intron Retention
Gene
ENSRNOG00000039405 | Prss29
Description
protease, serine, 29 [Source:RGD Symbol;Acc:1305856]
Coordinates
chr10:14681319-14681888:+
Coord C1 exon
chr10:14681319-14681485
Coord A exon
chr10:14681486-14681565
Coord C2 exon
chr10:14681566-14681888
Length
80 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
AGAGCTTCTTTTTCTTTTAGGGT
3' ss Score
9.23
Exon sequences
Seq C1 exon
AATCGCTGCCTCCTCCCTACCGCCTGCAGCAGGTGCAGGTAAAGATAGTGGACAACACCCTTTGTGAGAAGCTGTATCGCAACGCCACCAGGCTCTCCAATCATGGCCAGAGACTGATCCTACAGGACATGTTATGCGCAGGCAGCCATGGCCGAGACTCCTGCTAT
Seq A exon
GTGAGTCCTGCTCATCTCCTCCTCTCTGTACCCATTCCCACGTCAGGACTAGTACCCATCAGAGCTTCTTTTTCTTTTAG
Seq C2 exon
GGTGACTCAGGTGGGCCTCTGGTCTGCAATGTGACAGGCTCATGGACCCTGGTGGGAGTGGTGAGCTGGGGCTATGGCTGTGCCCTGAAGGACATCCCTGGGGTCTACGCACGTGTGCAGTTCTTCCTGCCCTGGATCACAGGGCAGATGCAGAAGTTCTCCTGAGCCCAGCTGGCCTCATGGTGGTCAGCTGAGGATGGGTCGGCTTTGGTCACCATTCCAGAGTGGACCAGGGTTTAGACTCTGGACTAGGTGCCCAGCACACTGAGCACTAGCTACTGAAGGGCATGGCTATGTTTTCTGGCTTCCTTAATAAAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039405:ENSRNOT00000060387:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.7=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCGAGACTCCTGCTAT
R:
GGAGAACTTCTGCATCTGCCC
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]