RnoINT0118714 @ rn6
Intron Retention
Gene
ENSRNOG00000029223 | Prss32
Description
protease, serine, 32 [Source:RGD Symbol;Acc:1311905]
Coordinates
chr10:13201687-13202392:+
Coord C1 exon
chr10:13201687-13201713
Coord A exon
chr10:13201714-13202125
Coord C2 exon
chr10:13202126-13202392
Length
412 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
TATTCTTTCTTTCTCCTCAGGGT
3' ss Score
12.45
Exon sequences
Seq C1 exon
GAGCAGGGCCACGTTCGAGCTTGCCTG
Seq A exon
GTTTGTATCCTTTCTCGTTTTGCTCTACCCACCACCCCGACTGCCAAATACGTCTTGAGTGTTTCTTCAAGAGAACATTTATTAGATAAATCAAACAAGCTGAAGGGAGAAGCAGTCGCCGCTCTGAGGGGGGCCTCCCCTCTTGGCTCTGAACGTGGCGGCTGCCGCAGGAAGTTCTTATTTTATTTAGAACTGTAAGGGTCAAGTGTCCCATCTGCTGGGGACCACTGCTTCCTTCAGTTCTCAGAGCACCCATCCCTGAGACCTTCTAGAAACTCCCAATTCCATGATCCTGTCTAGTATGATGAAGAGAGACTGCCTTGGAGAACTTCAACCTGTGCTTTCTACCGGTGTGGCGAAGGTAACATGCTCAGGCCACCCCAACACCTGTGTATTCTTTCTTTCTCCTCAG
Seq C2 exon
GGTGATTCCGGAGGTCCCCTGGTCTGTGACGTTAACGATGTCTGGATCCAGGCAGGGGTGGTGAGTTGGGGATCCGACTGTGCTCTGTCCAATAGGCCGGGCGTTTACACCAATGTCAGCGTCTACATCTCATGGATTCAGAACACAATGTGGAATATACCCACAGAAGGAAAAAATTTCTCCCCAAGCCTTTCAAGCACCCCACTCTCGGGCCTGTTGCTCTTTCTCACGTCCCTCAGTAGCGCCTTCCTCCTCCTGGGGCCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029223:ENSRNOT00000071525:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(3.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=50.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGGCCACGTTCGA
R:
TTAGGGCCCCAGGAGGAGG
Band lengths:
294-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]