RnoINT0118772 @ rn6
Intron Retention
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119085258-119086812:+
Coord C1 exon
chr8:119085258-119085517
Coord A exon
chr8:119085518-119086657
Coord C2 exon
chr8:119086658-119086812
Length
1140 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCAAAATGATCTCTGTGTAGGTA
3' ss Score
5.98
Exon sequences
Seq C1 exon
CCATCTGGATTACGTAGTGTCGATGGGAGAGGCTGACCTGTGGTCCAGTATGTCAGTGAAGATTCCAGTTCAAGACATCATTGTCCACCAAGATTACTCTGTGATGAGAACAATTGTACACGACATTGCCCTTGTTCTGCTGGCCTTCCCCGTGAATTACAGTGTCAACATCCAGCCTGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCGGGGACCCTATGCTGGGTGACTGGATGGGGCAAAACAATTGAACGAG
Seq A exon
GTGAGCCTAAAGTAAGACTCCACCAAGTACGGACCAGGGATCAGACTACTTAGTAGCCTGGGATTGGTCTAAGAGGCTAAAGTGGGGGACGGGGAGCCAGAGTTTCTAGAAAGTAGATAAGGGAGAGGAGAGAGAAGGTGGTAAGAGAGAGGAACTGTTGGTGAATTTCTATTGGTTTGTTGGGGCTTGAGGACTTAAGTACTGACCAGGGTGGATACTCACCAGGGTGGATTTTCGCTTAGGGTATGATGACCTGTCTGGAAGCTAGAAGTACCTACCTTGATAGAGAGGAAGCTGCTTGTATGAAGCAGAGGCCAGGAAAGTCAGTGAGTCTATAAGGTGCAGGATCTCAGCCTGGGGATACTGACACATACATACATACATACATACATACATACATACATACATGTCTCAACCCCTCTGGGGATCAGATGACCTTTCACAGGGGTCACTTAAGATGATTGGAAAATGTAGATTCATAACAGCAAAATTACAGTTAAGAAGTAGCAATGGAAATAGCTTTATGGTTGGGGGGGGTCACCACAGCATGAAGAACTGTATTAAGGCATTAGAGGGCCGAGAACGACTGCTTTGGGGTCTCCCATTATTGGGAAGAGTTTAGATTGTTACTTTGGGGTACCACATGTCCAAGAGGTACAAGTAAGGATGCCTTCCTGATTATCAATAGCATCAGTGAGAGCATATCACATACCTGTCACCTCAAAGGCTGACAAGATTTCATCCTCCTCTCTTAGGCTATTCTTTCTTCTGCTTCTTTGATTTGGACTTCACATCATCTTTTACTCTCGGTGGGGTTGGGTCTCCGTTTCCCTCAGTGTGAGATTCAAGAAATAGCTGGAGTGTACCTGTGTGTGAGTGTACCTGTGTGTGAGTGTACCTGTGTGTGAGCATACCTGTGTGTGAGCAACCTGTGTGTGAGCATACCTGTGTGTGAGCATACCTGTGTGTAAGCATACCTGTGTGTGAGCATACCTGTGTGTGAGTGTACCTGTGTGTGAGTATACCTGAATGTGAGTATATCTGTATGTGAGCACTGTATTGAGACCCCGAGGAGGTACAACTGACTCAGGCCAGCTTACTGAATGCAGATCGACCCCCTCCAAAATGATCTCTGTGTAG
Seq C2 exon
GTAGATCATCAAGGGTGCTTCGGGAGGTTGACCTAAGTATTATTCGTCACGAGAGATGTAATCAGATCCTTAAGGACATCACAGGAAGAATATTTACCCTAGTCCAGGAAGGGGGAGTCTGTGGCTATAATAAGAAAGGAGGAGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073:ENSRNOT00000048655:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGGTCCAGTATGTCAGT
R:
ATAGCCACAGACTCCCCCTTC
Band lengths:
353-1493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]