RnoINT0124461 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23606639-23607122:-
Coord C1 exon
chr12:23607010-23607122
Coord A exon
chr12:23606832-23607009
Coord C2 exon
chr12:23606639-23606831
Length
178 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CATCGGTTAATCCCCTGCAGGTG
3' ss Score
8.69
Exon sequences
Seq C1 exon
GTGGCAGGGATGCGCTATCTGCATGGCATCCTGGGCCCCATCATTGACAGAGTGTTCGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
Seq A exon
GTGAGGCCGGGGAAACCGCTGGGTGCACAACGGTGCCAAATCAGGTTCTGTGTAAAGGCGTTTATGGTTCCTTTTGTCTGGGTTCACATGTCCTTTCTCTCTGTATCCGATGTCAAATGGGACCCCCAGCTGCCTCGTATTCTTAAGTACTGACCGTTCATCGGTTAATCCCCTGCAG
Seq C2 exon
GTGCTCTGGGCTGCACCGCCCACAGACGGAGGCTGAAGTGTTAGAGCAGAGCGCACAGACGCTGCGTGCCCACTTGGTGGCGCTGCTGAGCGCCATATGCCGCTCGGTTCGCACCTGTCCAGCTGTGGTCCGCGCCACTTTTCGGCAGCTGTTCAGGCGCGTGCGGGAGCGCTTCCCCAGCGCCCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.5=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCTGCATGGCATCCTGG
R:
CCTGAACAGCTGCCGAAAAGT
Band lengths:
257-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]