GgaINT0129975 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4136855-4137229:-
Coord C1 exon
chr19:4137117-4137229
Coord A exon
chr19:4137042-4137116
Coord C2 exon
chr19:4136855-4137041
Length
75 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGGGTCTGTGGCGCCTGCAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGACAGGGATGCAGTACCTGCATGCGGTGCTGGGGCCCACCATCTCCCGGGTGTTTGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAGGTGGAGATCAAGGACGTTGG
Seq A exon
GTAAGGGGCACAGGGGCTACAGTGGGTGGGGGTGCCCGGAGTGCTTGGCACTGAGGGGGTCTGTGGCGCCTGCAG
Seq C2 exon
GTGCTCGGGGCTGCACCGGGTTCAGACAGAGAGTGAGGTGATGGAGCAGGGCCGCCAGCTCCTCCAGTCCTACCTTGGGGAGCTGCTGGATGCCATCGGCAAGTCAGCTCCTACCTGTCCTCCTGTCATCCGTGCCGCTTTCCGGCAGCTCTTCCAGCGCGTTGGGGAGCGCTTCCCCCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATGTGGAGCTGGACCCC
R:
GGAGGACAGGTAGGAGCTGAC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]