RnoINT0130873 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130278628-130279198:-
Coord C1 exon
chr7:130279121-130279198
Coord A exon
chr7:130278742-130279120
Coord C2 exon
chr7:130278628-130278741
Length
379 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ACTCTGACCTGCTCTCCCAGGAC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTCCTGGATCCAGAGCTGGAGTTGGCTGACCTTGCCTTTCCACCACCTACAACATCTGCTTCCTCACTGAAAATGCAG
Seq A exon
GTGGGGTCACTCTGCTCTGGTATAGAGATTGCATTGCCTCTAATGGCCAAGCTGATGGTGTCACTCAGCCTACCTCGAAGCTGACCTCAGGCTTCTCTGGCCTAGGCAGGAAGAAGTCTAGAGCAAAGGAGCTATACAGATAGGTGTGGTGACTGTGCCTGAGTCAGTACAGAACAGTCAAGGGGCTCTGGACAGGAACCATTTGCTCAGCACTTGCAGGACTCACTTGGCTGAGAAGCACTGCTGGGAGAGGCAAAGAGGGTGGCAGAGGTGCCTGGGAAGCCTGTGTCTGGCTGTGACGGGGAGTGGAGAGGAGTGCCCAGGGCCCTTGGATGCTTCCTGGGACCTGACACTCACCCACTCTGACCTGCTCTCCCAG
Seq C2 exon
GACAAGGAGCTCCGCGCTGTCTTTCTGCGGCTCTTTGCTCAGCTCCTGCAGGGTTACCGCTGGTGCCTGCACATCGTGCGCATCCACCCCGAGCCTGTCATTCGCTTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(0.1=0.0)
A:
NA
C2:
PF0345514=dDENN=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGGAGTTGGCTGAC
R:
CTTATGGAAGCGAATGACAGGCT
Band lengths:
182-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]