RnoINT0130876 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130277962-130278342:-
Coord C1 exon
chr7:130278244-130278342
Coord A exon
chr7:130278167-130278243
Coord C2 exon
chr7:130277962-130278166
Length
77 bp
Sequences
Splice sites
5' ss Seq
AATGTATGC
5' ss Score
3.91
3' ss Seq
GTCTGCCTATGTTCCCTCAGGAA
3' ss Score
10.76
Exon sequences
Seq C1 exon
TTGGTGGCTCATGAGGTAGCACGGATGCGAGCAGATGAGAACCATCCCCACCGCGTCCTGCGTCACGTCCAAGAACTAGCAGAGCAACTTTATAAGAAT
Seq A exon
GTATGCTGGGTGACATGGGGGGCATGCCACCACCTTGGTCCTGGCCCACTAGCTAATGTCTGCCTATGTTCCCTCAG
Seq C2 exon
GAAAACCCGTACCCAGCTGTGGCAATGCATAAAGTGCAGAGGCCAGGAGAGGCCAGCCACCTGCGGCGGACCCATCGGCCATTCCCCCGGCTAGATGAGGGCACAGTTCAGTGGATTGTGGACCAGGCTGCAGCCAAGATGCAGGGTGCACCTCCAGCTGTGAAGGCTGAAAGGAGGACCACTGTCCCTTCAGGGCCCCCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123353=SBF2=PU(2.7=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCGAGCAGATGAGAACC
R:
CTCATCTAGCCGGGGGAATGG
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]