RnoINT0130877 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130277767-130278166:-
Coord C1 exon
chr7:130277962-130278166
Coord A exon
chr7:130277880-130277961
Coord C2 exon
chr7:130277767-130277879
Length
82 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
GAACACGCCTTTCTCTTTAGCGG
3' ss Score
6.24
Exon sequences
Seq C1 exon
GAAAACCCGTACCCAGCTGTGGCAATGCATAAAGTGCAGAGGCCAGGAGAGGCCAGCCACCTGCGGCGGACCCATCGGCCATTCCCCCGGCTAGATGAGGGCACAGTTCAGTGGATTGTGGACCAGGCTGCAGCCAAGATGCAGGGTGCACCTCCAGCTGTGAAGGCTGAAAGGAGGACCACTGTCCCTTCAGGGCCCCCCATGA
Seq A exon
GTATGTGGCGTGAAGAGGAAGGCAGACTGCTTTAGGGTGGGGGCAGGGCCAGGAGTGAAAGTGAACACGCCTTTCTCTTTAG
Seq C2 exon
CGGCCATCCTAGAGCGGTGCAGTGGGCCTCACATCAACAGTGCCCGTCGCCTGGAGGTGGTGCGCAACTGCATCTCCTACGTGTTTGAAGGGAAAATGCTTGAGGCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF123353=SBF2=PU(2.7=8.7)
A:
NA
C2:
PF123353=SBF2=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCCCCCGGCTAGATGAG
R:
CTGTTGATGTGAGGCCCACTG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]