RnoINT0130885 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130275285-130275628:-
Coord C1 exon
chr7:130275555-130275628
Coord A exon
chr7:130275481-130275554
Coord C2 exon
chr7:130275285-130275480
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTGTTCTGTTTCCTGGGTAGCCC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACATTGTCCAGATGCACATTGAGACCCTGGAGGCTGTACACCGTGAGAGCAAGAGGCTGCCCCCAATACAGAAG
Seq A exon
GTAAGCAGAGGCTGAGCAGCTGTGCATACAAAATCTGGGCCATATTCTAAGTTTCTGTTCTGTTTCCTGGGTAG
Seq C2 exon
CCCAAGCTGCTGAGGCCACGCCTATTGCCTGGTGAAGAGTGTGTCCTCGATGGCCTTCGGGTGTACCTGCTGCCAGATGGGCGTGAGGAGGGTGTAGGAGGCAGTGGAGGGGGCCCTGCTCTACTTCCAGCTGAGGGTGCTGTCTTCCTTACCACATACCGCGTCATCTTCACGGGGATGCCTACTGACCCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0289315=GRAM=PU(74.7=98.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACACCGTGAGAGCAAG
R:
TCAGCTGGAAGTAGAGCAGGG
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]