RnoINT0130890 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130272720-130273419:-
Coord C1 exon
chr7:130273212-130273419
Coord A exon
chr7:130272917-130273211
Coord C2 exon
chr7:130272720-130272916
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GATACCTCCAATTCCTACAGCTA
3' ss Score
6.94
Exon sequences
Seq C1 exon
TGTCAGAGGAGCTGGAGCCCAGCACACTGACCCCGTCCTCAGCCCTGAAGCCCTCTGACCGCATGACCATGAGCAGTCTGGTGGAACGGGCATGTTGCCGTGACTACCAGCGTCTTGGACTAGGTACCCTGAGCAGCAGCCTGAGCCGGGCCAAGTCTGAGCCCTTTCGCATCTCTCCTGTTAATCGCATGTATGCCATATGTCGCAG
Seq A exon
GTGAGGGCTGGCTAGAACACGCCAGGAAGATTTTGCCAGGACTTACTAGGGTGGTAGGCAGTGCTTGGACACCTTCCCTGCTTGCCATGGATCCTGGAGAAACAGAGTTGGGCTGCAGGTTTGGTAGAGGCTTCCAGAGAAGCATAAAGTGCCTTTGGCCTTTAGAATCTGGGAGCCTGACTTGCTCTATTGTGCTAACCCTGTTAGCTCTTTTTGCCTCCTCTGTGTAAGGCTCTGTGGGTAGGCATGGGGGAAGGCCGTAGAGCTGCCCTCATGATACCTCCAATTCCTACAG
Seq C2 exon
CTATCCAGGATTGCTGATTGTTCCCCAGAGCATCCAGGACAATGCCCTGCAACGCGTGTCCCGTTGCTACCGCCAGAACCGTTTCCCTGTGGTCTGCTGGCGCAGTGGGCGCTCCAAGGCTGTGTTGCTACGCTCTGGGGGCCTGCATGGCAAAGGTGTTGTTGGTCTCTTCAAGGCCCAGAATACACCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PU(13.9=91.4)
A:
NA
C2:
PF066029=Myotub-related=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGCAGTCTGGTGGAAC
R:
CCAACAACACCTTTGCCATGC
Band lengths:
307-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]