RnoINT0130913 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175217458-175218094:-
Coord C1 exon
chr1:175217981-175218094
Coord A exon
chr1:175217587-175217980
Coord C2 exon
chr1:175217458-175217586
Length
394 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CATTTTCTTCTTCTTTACAGACA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GATAAAGAAGTTCGAGCAGTTTTTCTTAGACTATTTGCACAACTGTTCCAAGGGTACAGGTCATGCCTCCAGCTTATACGGATCCATGCCGAGCCTGTGATACATTTTCACAAA
Seq A exon
GTAAGGCACAGTGCCAGGTCGTCTGCCAAGTGGACTCATTTAATAGGACCACGCTATAAATCACGTGTATTAAATTAATTTTTGAATGTTCTTAAAGTCTCTGTGTTATGTGACAAATAGAACTGGTATAATATTTTCCTTCAGAATATGTAAGCTTAAAGTTGATTTTTCTCATATTAAAGTATTAATCAAGCATTAGTTAAAAATTAATACTTGATTTTTTTTCCTCTTGTCTTTTATATGGACAAAATCTTTTGAGAGAAATATACTTTGTGACAGTGTTTAGTTATATGTAAAGTCCTTCAACCAATCTTTAATCTTTCTATTTTTATTTTAACCATTTGGCCATTACCCAGTGATAAGTTATCATTTCACATTTTCTTCTTCTTTACAG
Seq C2 exon
ACAGCTTTCTTGGGGCAGCGTGGTTTGGTTGAGAATGATTTCCTCACTAAAGTACTCAATGGAATGGCATTTGCAGGTTTTGTTTCAGAAAGAGGACCTCCCTATAGAGCCTGTGATCTCTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(42.9=69.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGTTCGAGCAGTTTTTCTT
R:
TCATCAAAGAGATCACAGGCTCT
Band lengths:
238-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]