RnoINT0131210 @ rn6
Intron Retention
Gene
ENSRNOG00000000981 | Scarb1
Description
scavenger receptor class B, member 1 [Source:RGD Symbol;Acc:2302]
Coordinates
chr12:36754917-36761443:+
Coord C1 exon
chr12:36754917-36755063
Coord A exon
chr12:36755064-36760701
Coord C2 exon
chr12:36760702-36761443
Length
5638 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTTCTTTTTTTCTCCACAGGGC
3' ss Score
12.68
Exon sequences
Seq C1 exon
AGCGGGATGATGGGTGGCAAGACCCTGAACACGTTCTACACGCAGCTGGTGCTGATGCCCCAGGTTCTTCACTACGCGCAGTATGTGCTGCTGGGGCTTGGAGGCCTCCTGCTTCTGGTGCCCATCATTTACCAACTGCGCAGCCAG
Seq A exon
GTAAGTAGGCGGGACGGCCACGCCTGGGACTCTGCTCCGGTTGCAGCCGGCATTTATCTCCTGCAGCTAGCTCTCTCTGTTCTACCTGTCTGTCGCATCCTGCACTAACTTTTCTCTACAAGTCCTGGAAGTCCCAGGACCCTCCCGGGTGGGTGCTGAGCTGAGACAGGTACGCAAGCCATTTGACCAGCAAGTGGGTGCACTGTGTGAAGTGCCTGCTGAAGGTGGAGGTGGGGACTGGGGGGGGTGGCCTGGTTAGCAAAGCAAATGAAAGCCAAGAAGAGAAAAGATCATTTTGGGGTTGGAGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAATAGAAAAGAAAAAGAAAAAAGAGAAAAGATCATTTTACCCAAGGAAAATGCTCTGGGCCAGAGCTGGGTGTGAGGTGGAAACGGGAGAAGCCACAGATGGTATCTTGAACTTAAATTTTCTAAAAGGAACAAGTGAAAGAAATTAGTTATAAATTTGGCTTCACCCAAATATATCAGAATATGAGGCTGAGGTTTTACGTCAGCAATAGGGCACTTGTTTAGCCAATGCAAGGCCCTGCATTCAGTCTTCAACGCTGACAGGAAAAAAAAAACAACAACCCATGATCAAAATTAATGAAAGGAAGGTTGGGGATTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCTGAAAAAAAAAGAAAAAAGAAAAAGAAAAGAAAAAAAATTAATGAAAGGATTTGAAAAAGAAGACGAAAGGAAAAAAGGTCTGGAGAGATGGCTCCGTGGTTATAAGCACTTACTGCTTGCAGACGACCCAGGTTCTATTCCCACCCACTCGCTGTTTTGCGACCCTCTGTAACCCCAGTTCCAGGTGATCTGAAGGCACGCACACAGTGCTCATACTTGAACAGAAAATATTCATACACGTAAAATTAATACATAAATATTTTAAATATAAAATATAAAGAACACAAAGCCTCTCTAAATACTTTTCCAGGTTTAATCTTTCAAGTCTGGAGACTATTTCACGGCAGGTGTGGTGGTCCATGCCTATAATCCCAGCCTTCAGGAGGGAAGTTGAGGCAGGAGGATGTGAAGTTCAAAGCCATCCTTGGCTACATGTAAAGTTTGATCCAGGCCAGCCTGAGCTACATTGTCTCAGAAAATAAGTTAAACTTCAGAAAAGAGCAGTGTGCTTCAGACAGGGGTAGGAGTGACTTCCATAAGGAAGAGAGCAAAACTGAGTGAGAAATGTCACCTCAGGGCATGCGGCCATTGAAAGCAGGAAGCAAAGGGGGTCATGACCAGAACCTTAGTTCCCTTCTGGCCTCAGGGGCACGTATGCATCCGCTCGTGATGTAAACCAAGTCCATAGATCTTGGGGTTATGATAATGGTCAAGTCCCCTCGTAGTGCTGACAGCTGCAGTTAGGAAGCAGGGCATTTGGGGACAGGACTATGATCAGCTGTGATAAGAGAGGATTGCTGTCGGCAAGCAGGGGAGCCACGGGCCACCTTTGAACACCTGTGGAAGAGCCGCCCACAGGGTCCCACCTGAGAGGTCCTGGGGCCACAGGCTGAACTTCCTGTGTGTGCTTGGGGGTGGGGGGAGCTTCCAACCTGCTGGCTTTCTTTCTGAAAGGTGTACATGCTTGCTTGCTTGCTTGCTGTGGGAAGGCCGGATCCCTCTGGAGTCACCAGTACCCTGCTTCCCTATCCAAGCACCGGCCCCCCAGTCTCTTGTCATCTCCAAGGGCATCTGGTTGCCTCCGGCTCTCCTTATTGACCATAGCTTGGAGTATCTGGTGGACATCACAATCTGGGCTTCCAGGCTGGTGTGTCCCTCTTCCCTCCTGCTGTCCAGTGAGAGCTGAGCCAGGCTTTTCCAGTCAACCATTGGAGGAGAGAGGAGGAACAAGATGAGGAATCCCAAAATAGAAGGGGGTCTGGGGGTGAGGTTACTTGCCCTGCAGGTTTCCTCAGAGGCCAAAGAAGTAAGCCACACCCTACCTGCCTTGCCCTAACAAAGCCAGGCCTGCCTCACCTGTGTGTTTGTGCACTCGAGCATCTTGGGGTTTTGTTTTGTTTTTTTATAACTGCTTGCTGGTAAACAACACAATTGGTCAGTCATACGTCATTCATAAGGAGAGCAAGTCAAGAGTGCGTTAATGTTTCCTTCTGATTGAAAACCTCCAAAAACTTGGGGGGGAAGGAGTTAAGTGAGAGATTGTACTCAGTAGTTCCCAGGCCCTAGGTTCAAGTCCAGCCCCACCAAACCAGACCAGAGAAATCCAAATACTCACCAGGCCTGCCCCGCTGGGGCCACCTCCACCACTTGCTTCCTGTCGGTGACTTTCCCGCTTGCCGGTCTTCTAGGGCAGTTTGCCCACAATGCAGGGTGGAGGAGGACTCTGCAATCCTGTTCTCTTCTGTCCCTTTGCTTCTGGGGGACCCAGCGTCACCCGCTGAGTGACACAGCCATATAAACTAGCTTGGTTGTCTTCCAGGAGAAATGCTTTTTATTTTGGAGTGGTAGTAAAAAGGGCTCGCAGGATAAGGAGGCCATGCAGGCCTACTCTGAGTCTCTGATGTCACCAGCTGCCAAGGGCACGGTACTGCAAGAAGCCAAGCTGTAGGTGCGTACCAGGTAACCCCCACCCTCACCCCACCTTGCATAGCCAGTAGACATGTTCTACCCTCTCTACCTATAGCATCTGTCTGGGCGTCATCCACGTGAAGACCCACCCTCTTGGCCTCTCAGTGGGTCCCATCTTGCCTCAGTTCCTCAGATCTTCAGTCACTGACTCTCATTTTCAAGATCCTGTTAGAAGATGAAGGTTAAGCCAGTTGCTTCTCAGAGTTCCATCCCCTGCAGTTTGCTAAATACAGGTCCCTGTGCATCCCGGAAGCTAAGAGACTCTTACAGCCCAAAGGGTTTGAAAACTGGTTTTTTTTTTTTTTTTTTTTTTTGGACTAAAAAGGGTGCAAAATTGCACACTGACTCCAGTCCAGAATAAGTGACTAAAAAGTGAAGAAGTTTAAACATTGGTTGAAAACCAGCTGCATTTTTGGGGCCGGGTCTGAGGATAGGATTTCGTGGTCGAGTGCTCAGGGTACACGACAGACCTGCTCGATACAGTCTGAATTTAAAGCAAGTCATGTGTCTGCCCTATGGCGGATGGGTGATCCTGGTGGCAAGCCACCGATTCAGGTAGAGCTGGCATCCTGACTTTCTTAACAGCCCACCTTGCAGGGATTCAGGACAGCACTTCTCTGAGATCTCGAGGCCCTGTAGGGATCGAGGCCCTGTAGGGATCAGGGCTCAGGAGAGACTGAGCCTTACAGGGCGTCTCCCTGCCTGGGAAGGGACAGGAAGAGCTATGGGCCCTGCAATTTGGGGTTAGCAGAGGTGAGTCCTGTCTCAACGGAAGCTGTTATTTTAGCCTTTGAGCCAGCCTGGGTGTGAACACTGCTTGGAGAGGGAGCTGGGGACAGGGTAGGGATAAGGGTGTGGAGGCCACAGCTCAGCTCCTGGGCTCAGGGCGGCCAGCTGGCCACTTCCAGCAATGCCAGCTGTTTGAGAATATAAAATAGAACCCTGGTGGATGTAGGATTGTCCTGGTGGGTGCCACCTCCCTGAAGGAGGAAAGAGGACAAGGCCCAGCAGAGGGGGCTCTCCTGCTCAGTGGGTCACCATGTGTCCCTGGAGCTGAGGAAGGGTCCTGGTTTAGTGGTCCTTCCAGGAAGGGTTGGGGGAGGCTTAGTGTTGCCTCTTGCTTCCTTCCAGTCATGGCGATGTTTGCTATTGCCAGAGGATAGGTAAGGCTTTCCTGAGGAGATGTTGGGGGACTCCTAGGGGACAAATGTAGGCTCCAAGCAGAAGCTCCGTGGTCACTTTAGCCCAGGTGGAGCCCCTAGGTGCACAGCCACCACCCTGTTCAGACCCTAACAGAATGAACAAAATTGGGGTTTCCTCTTTACTTTCCCAGCTTGGTCTAATCCTTTTTGGCTTCAGGGCTTTCCCGGGCTATGGAGAATCGATTGAGTCCCATTCCAGGGGGATACCTCTGGCCCTGACCATGTGCTAGGGAGGGCAGTGTCCTCTGAGGATCAGCGTATGTGGGGGAGACATGTGGGCCCTTGCATAGGGACCTTACCCTACCCACCCAACCCTCCACGGCCTGGCTAAGTGAAATTCTATGAGCCCCCCAACACTTTGCCGTGCACCTGCATATGGGGGTGGCCCCTAGAGGCTGCTACTGTTTGCTATGGACAGGAAACAGCTGCCACCAGGTCAAAGGGTATATAATATGAACAAGGTCCCCCCGGGTGGGTGGGTGTTGCTGTAAGGCAACGGGGTTGGGGGCGAATGGGCAGGGTTGGCCTTGAACAGAGCGGCCTTGAAAATGCTGTGAACCTCTGCTTCTCACTGATCTGTCTCTCATTCTAAGTTCTCCTCTGTCAGACACGGTACGGGAAAGGAGCCAGAGGAGGGGAAATCGGTACCCAGTGCCTTGTGGCTTTGTTGTGTGTGTTTTTCATGGGGGAGACCAACCTACAAGACAAGCGATCCTCCTGCCTCAGTCTCCCAAGTGCATGCACCTCTACTGTACCTTGTGTCCCCTTCCCTGCCGCCCCCCCACTTTACTTCTGATTTTGTCTGTCCGTGTGTGTGTGTGAGATGCTGGGGATTGAAGGCAGGGCCTTTTACTTAGTCTGTTCCTCCTCTGAGCATCGCCCCCTAGCACCCTGAGACTTTCTCAAATGCTGGGGTGCTGGGGGCAGGGCTACTGGCTTTGGTCCAAGGAGAAGACGCCTCCCTGCAGTTTCCTTCCCTGCCACTAGGGGAGGGGTGGGGTTTGCAGGGCAGGGGCGCCCAGTGCTCTTCTCCCTGCCTTCCATTCATTTTCCCAAGTTGGGAAGTCTTCTCGACTCGGAGTCTCTCGACTTACCTCAGCCATCTTTTCCTGTTCTGTATACCCTTTCCCCAACACCCTACTGTCCCTAAGGCCCAGTGGCCACCATTACAGCAGTCTGGTGAGATGGTGTTTCTTACCTCTATGAACAACAGCCAGTTTTAACAGCTGTCCCTGGCCTGTCCTGAGACAGCATTTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGAGACAGCATTTTAAACATGTCCTCCTGTGGACAGACATTTAGGCCCATCCTAGTTTCTCTGTGTGACAGTGTTATCTACCTACTCCGGACTCTGTTCTGTCCTCCTCTCTGTAACGGGCCAGTCTCTCTGGCCTCCGTTTCCCCATCTCTAAAGGGGGACAACGGAACCCAGAGATCTACATGACTGAGGAGTCCCCGTGTATAGGGGGCGGCATCTCTGGGTTCATGGCAGACAGTGCTGGGGTGGTGAAGTGTTTTCTGTGCTGGTGGGATAAGGGGTTAGGCAGGGCAGGGCTAGGTGACAGGCCAGTGACTCAGCTTCTTTTTTTCTCCACAG
Seq C2 exon
GGCCCAGAAGACACCACGAGCCCCCCAAACCTGATAGCTTGGTCAGACCAGCCGCCCAGTCCCTACACCCCACTTCTCGAGGACTCTCTCAGCGGACAACCCGCCAGTGCCACGTCCTGAGCCCCCAGATGTCACACTGTCCACACGGCACATAGTGTGCGGAAACACTCAGGGACCAGGGACAGACCCGCTGCTGAGTAGAGCCTGTTGGGCCACAGGCGACCTCTTCTAAGTGACCTGTGAGCCAGGCTGTGGGAACTGTAGCTGCCCCTCCTGTAGGAGCTGGCGCCGCCGGGGCTCCTGACTTTCTCCGTCTTTCTCCAGCAGGCTGAAAGCCTTAGTTCCCACAGAGGACACAGATCTGTCACTCCTAGGGGCTGGGCAAACATCGGCCTCTTGCGTCACGGCTGGACAAGCAGTTCCAGATCCTGACCAGTCTGCACACACACTCTGGCGCTGTATCTGGCCCTTCTCCTACAGTCTCTGCTGTCACCTGAACACTGAATTGGCCACTGTAAGTGGCAGCGGTGGCAGGCCCCCTCAGGGTCCTTATTTTTCAGGCGTGGGGTCAAAGAGAGAGGTGTGGGCCGTCTACCCCTGGCACCTAGTATATCTCACCAGAGGGTAGGGTATACAGAGGCCCAGCGTCCCACAATCGACCCCTTTTTTTCTACTGGAAGAGAAATTTTATCGTCTTTTGAAAGAAAGTCATGACTGAAGCAATAAACCTTTTCACAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000981:ENSRNOT00000001299:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(10.2=93.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]