HsaINT0145437 @ hg38
Intron Retention
Gene
ENSG00000073060 | SCARB1
Description
scavenger receptor class B member 1 [Source:HGNC Symbol;Acc:HGNC:1664]
Coordinates
chr12:124776856-124786503:-
Coord C1 exon
chr12:124786357-124786503
Coord A exon
chr12:124778587-124786356
Coord C2 exon
chr12:124776856-124778586
Length
7770 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
AGCTTTGCCTTTCTCCACAGGGT
3' ss Score
11.12
Exon sequences
Seq C1 exon
AGCGGGGCCATGGAGGGGGAGACTCTTCACACATTCTACACTCAGCTGGTGTTGATGCCCAAGGTGATGCACTATGCCCAGTACGTCCTCCTGGCGCTGGGCTGCGTCCTGCTGCTGGTCCCTGTCATCTGCCAAATCCGGAGCCAA
Seq A exon
GTAGGTGCTGGCCAGAGGGCAGCCCGGGCTGACAGCCATTCGCTTGCCTGCTGGGGGAAAGGGGCCTCAGATCGGACCCTCTGGCCAACCGCAGCCTGGAGCCCACCTCCAGCAGCAGTCCTGCGTCTCTGCCGGAGTGGGAGCGGTCACTGCTGGGGGCTGCGCAGCACGCTTGCGTCTTTTGCATGCCGCGTTGCCACTACTCTGCCTGTTCTGGAAGGCCTGGGACCCTCCCTTGGAGGGGGCACAGGTGGGCTTTGAGTAATGAGACCTGGTACTTGCATCATCCATTCATCAAGTCAGCACCCGGGGATGCCAGGTTCTGTTAGGGGCGAGGGGACGTACAGCAGTAGAGGAGACAGCTGAGATCCCTGCTCAGGGGGATTGAGGGGGGCTGGCATCCCAGCCGGGGAGACAGATGAAAACCAAGTAAATCAGCAGAAAAGATAATTTCACTCATGATAGGAGCTGTGAGGGGTTAGAGCCAAATAGAAATACAGCGTGAGCCACGTGTGAGGTTTTCAGTTTAAATTTTCTAATAGCCACTTAACAGTCAAAGGAAACAGGTGGAATTAATTTTAATCTTATTTAACCCAAATATATGCAAAGTATTATCACTTCAACATGTAATCAGTATAAACGGCATCAATATTTTTGCAGTGTTTTTGCATGAAGTCTTTGAAATCCTGTGTGTACGATACATGTGCAGCAGGTCTCATTTTGGACTGGCCCCGTTTCAAGGGCTCACCAACTGAATGCAGCTTCCAGACTGGAGAGTGCATGTCTGGAGCAAGTGGGGACAAGGACAGATGGAGCTTCAGGAAGGCCTCTCTGAAGAGGTAGATAGTGAGCTTTGACATGGAGGCCAGGGAGGCACTCAGCACACAGCCACATGAGGAATGCTGCCTGGAGCGGCCACTGCAAAGGCCCTGTGGCAGGGACAGGCAAGGCACATTGGACGGTCAGGTAGGGCCAGGGTGGCTGGAGGGGAGTGAGGGCAGGGACAGAGGTAGGAGGTGGTGTCTGAGAGTGGACAGGGCGGGCCACCCAGGGCCTCGTGGTGCACAGTGAGCAGTTTGGAACTGATTCTGGGAGTGACAGAGGCATTGGAGGCTTTTAAAGAGGGGAATCACTAGGTCAGCTGCTGGCTGGGGAATGGGCCCCGGGCTGGGAGGGGTGGAAGCCTGGGCCCAGCGGGGAGGCCCCAGTGCGTGAGGAAGTCGATGGCTTGAACAGGATGGGGCAGCTGCTATCAGGAGGGAACGGAAGTGGGGAAGAGCTCCAGCCCTGGGCTTCAGACCTCCAGAAGCAGCAGGAAGAGGGGTGATAACAGTGTCCCTCCTTGCTTCGGGGTCATTTATTTATTCATTCATGCATTCACTGCAAGGCCCTTTGCACAGGTCAGGGGATGCAGATGACCAGAACATAAGATCTGCAGCAAAGATGGGCAAGGCAGGCCTTTAGGCAAGTTACTACAGTCACACGAAGGACAGGAGAGCTGTGATCACAGAGCTCAAGGGGCAGTGGAGATGGGCGAGTGGCTGCCATGGCAGGGGAAGGGATGCTGCCCACTGGCAGGTCATCAGGAAAGGCTGTTTTTGGATGCATGGACCAGAAAGCCACTCTCTGAGGTGGCCCCCACCTGCATCATCCTAGGGCCACAGGCCGAGGCCTTCTGAGGGGCCTTGGGGCTGCCCCGCTGCTCTGCTGGTCTTGGCTCCTCTGCAGCACCTGCTTCCTTTAGCACTGGTGAATGATTCTTCCTCTTCCCCTGTCTCAGGGAAGGCTTGCCTGCTTCCATGCTTGCATGCTGGGTGACAATAAAGCATTCCTGGTTCTTCACCTTGGCTTTCAGACCTGAAACCCGACTTCCTTTCAAAATTCCTGTCCTCGGGGGGAAAAGGTTTCCACAATGTGAGATGGTAGCCTGGACACCAGCTGTCATCATGTTGCTGCTCTAGCGTTTGAGCTCCCGATGAACAATGACCATTGGGTCCAACCAGCCCTTTTGGGAGCCCCCTTCTCTGTTACTGCCCCAGGGGGAGCCAGAACCCAGCAGGGCTGTGACTCCAGCGAGCAAAATGGAACTCCCTCCAGTTTCTAGACTGAATTATGTAGGGAGGACAGAAGGACTCAGAACCCACACTCCCAGACCATGAATACCTTCCCGTGGCAGAGCATCACCATAGGTGTCCACAAGTGACGACGCACAGCCACATGAGGGGGTCCCTGGGGACTGGCTGAGGGACTGGGCCAGAGGAGGCCATGACAGCCTCATCCCTCTGTCTCCTTCTGTCTGTCTCCAAATTGTCCACCAGAATGGGGACAGGGAAGGAGGGTCAGGAAGCACAGAAGGTCTAGGCTGTGGCTAGGGTCCCTTTCCCTGCCGCAGCCCCCAAATCAGCATCCCACCCTCAAATCCAGTAAGAATGCTACGATCGGCAGTGTGGCTCCCTCCCTGCAGGTTTCACTGGAGGCCACGTAAGTGAAATTTATCCCATTATGTGTGTTTTGATGTAGCAGGACCTTACCAGTTTTTTTTGTTTTTTTATTTTTATTTTTTTTGGTTTCTTTTTTGAGATGGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGGGAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCCGAGCAGTTGGGATTACAGGCACCTGCCACCATGCCTGGCTAATTTTTGTATATTGAGTAGAGGCGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCTGCCGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCGGCCTTATCAGTTTTTATGTAATTTGTCCTGATTTAAAAAAAAAAAATCACATGCGGGTAAACTCAACATATTTTAATTTCTCTTTAGAGAAATTTTCCACTTGAGCCAGGTATGGTGGCTCTTGCCTGTAATCTGAGCTACTCGGGAGGTTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCCATGATCGCACCATTGCACTCCAGCCTGGACAACAGAGTGAGATCCTGTCTCAAAAATTAAAAAAAGCAGTAATTTTTTCTTCTCAAGTCATTCTTTTAAAATAAATCAAAAGTATTTTAACAGAACAATCTGTTCCTCGTTGATTTTAAACAGCCCCCCAGCTAAGTCCACTGGTTGTCGGTCTCCATGGCCCATCTCCCCACCTTGCTTCCTCGCTGGCTTAAATTTTCAAGTGGACGAGCCCTTTTCAGCTTGGCTTGTCCACCTCCCAGGTGTGTTTCCTGAAGATGCTTGTACTTATGTCTAAGAGCGGCAGCTCCCCACATCTCAGCCACCTGCAATCGTTGAGGGTTGTTGGACTCTAAACTTATGTGCCTTTCCTGTTTCCTCTTTGCCTTTTGCAAATTGAAGAACCGTGTAAAACCATTTTTATGTGGCTTCAACGTCAACTATAAATTAGCTTGGTTATCTTCTAGGAGAAATGCTATTTATTTTGGAGTAGTAGTAAAAAGGGCTCAAAGGATAAGGAGGCCATTCAGGCCTATTCTGAATCCCTGATGACATCAGCTCCCAAGGGCTCTGTGCTGCAGGAAGCAAAACTGTAGGTGGGTACCAGGTAATGCCGTGCGCCTCCCCGCCCCCTCCCATATCAAGTAGAATGCTGGCGGCTTAAAACATTTGGGGTCCTGCTCATTCCTTCAGCCTCAACTTCACCTGGAGTGTCTACAGACTGAAGATGCATATTTGTGTATTTTGCTTTTGGAGAAACTGCCCTTCCTATGTTCTGAGTGAATAGCAGTTTTTTTGATCCCAGAGGGCAACTTGTATTCTGTGGGCTGGTGCCTATTTGCAAGGTCACATTAGAAAGACAGGAGCAAGGCTTAGGCCTGCTGCTTCTGGAATCTCTTGTGCAATAGACTCCCCTGGGGAAGTCTGCTAGAAATGCAGATCCCTGGGCAGCCTTCTAGCCTTCTGGAATAGGATCATGGTGGGACCCTGGAATCTGTATTTTAATGGACCCTAATGAGATTCTGATGTAGAAACATGTTTGAGAGGCATTGATCTAAATCTGGGATGACTGGCCAGGTGCGGTGGCTCACACCTGTAATCCAGCACTTTGGGAGGCCGAAGCAGGTGGATCATTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAACCTGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGTGTGGTGGCACACGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGATGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAATAAAACTAAAATAAATAAATAAATAAATACATCTGGGATGACTGACCAAGAACAAAGAATGTAGGCATCAACTGAACACCAACTGTATACCTGGGACTGGATCTGAGGGTAGGATTGCCAGATTGAGCACAAACAAACAAACGAAACACAAGAAACAACAGAAGGGTGCCTGTTAAATATGAATTTCTGGTAAGCAATAAGTAATTTTTATTGTGTTCCTGTGCAATGATAGGACGCACGTATCCTGAAAACCTGTCTGTAGTTCACCTGAAATTCACATTTAACTAGGCGTTCTGATTTTATGTGGCCGCCCTATCTGCTGGGAACATAGGCTGATGCCCCTGGGGGTTCTGCGTTTCCTTGGCCAGGTTCCTGTAGGGCTGAGGTCATGGGGGAGCCGTGGCCAGGGATGGTGTCCTTGCCAGGGGAGGTGACGGGCAGAGCTGCAGGCCCTACAACTTGGGGTTGGGCAGGGATGAGTCGCTCTACCGTGGTGCCTCTGATAATAGCTGTTATTTTAGTTTCTGAAAAATGTGCTGCCCTCAAGAGCTTCTGAGGCTAGGCCTACTTGGGTGAAAATAGCTTTCCAGGGAGCCACATTGTGGGGACGTGAGGCAGCAGCCCCACTCTTTGGGGCCACTTGGCTGTCTCTAACTCATCTCACTTGCCAGGGCTGGACAAGGAGATGAAAAAGAAAATGCCAAGGGGTGGGCAGGCAGGAGCCTGTTGGCGTTGGCAGGCGCTGCCAGCCCTGTGTCCCAGTCAAGCTCTGGGGCGCCCTTCCTGTCCATCTGGGAGTAGGGGGTGGAGTCTGACCATGTTGGGGTGGAGTGTTAATATTAGGAGAGGATCCTCCCTGGGACAGGGTCCCCAGGCTTGGGGGCAAGGCCTTCTGCCTGGACCCCCTTCCTTTCCTCTCTCCCAGGATTCCTCCAGGACACCGTAGTGCTGTGCACGGTTTGGCCCCATCGGTGTGCCTGCTCCTTCCAGCCACTGCTCCCTTCTGCAGAAACTTGCCTGGGATTCCCAGGGTGCAGGGGTGGGGGCTGGTCAGGGGCTGGTCAGGGCCTGGTCAGTGTAGAGCAGGGAGCTTTTCACTTTTAGCATAGATAGAGTGGCCAGGGCCCCATGGCTGCACCTCCCTGGACATAACCAGGATGTCCTGTCATCTGCCCCCCAAACAAAACTGGGGTCTCCCCTTTATTTTGCCAACAGAATCCAATTTTTAGGTGATGAGACAAGTGTTTGACTTGAAAAGACCCTCCTGCCCTGCCTCCTGGAAGGTCTGGAGCCCAGCCCAGCGCCCCGGATCCCCTAGGCATGTGAAACGGGGAATGCAGTGTCCTCCAGTGGCTGGCTGCAGCTTGGGGTGGGCACCTGGGTGGTGGCTGGTGGTCCCCCTGCAGGCCACTGCTGCCCCCTCTTGGGTCCTGTTCTGAGTCTCAGGCCTGAGTCCCTGGGGAAGGCCCCACACCTTTGCCCTGTACCTGGGTATGGGGATGGCCCTGAGGGGCTGCCTTGCTTGGGAGAAGGGGGGAAAACAGATATTTTTATATAAATAAGAAAAAGACAGCCCCTCTGGGCAGATGAGGCCTGCTGTAGGGCAGGGGGCTTGGTAAACTGTGTGTCCACTGGTCTGTAACCCTTCAGCTGGGTCCTTTTGTGCAGTGAACAGCCTGGACAACTGTCCAGGTGGCCCTTCAGGGATATGTTCCTGGACCTTTCTTAGCTTCTCACCGATCTTTCTTCCACGCCAAGTCCATGTTCCTCAGTCAAACAAGTGGCAAAGAGGAGGAGGAGGAGGGGAAGGAGGAGGAACCTGCTTCACCCTCTGGCACCTGCGGGTTTTGTTCCACGTGTCTTCCTTGGGAAAGACAAGGGGTTCTTTTACAGCCTAGGGGTGGTTTCCCCTTTCTACTTCTGAGTGAGACCTTCTCAAGTCACGGCTCTTTGGGCCCACATGGCTAAGGTCTAGCCACCTGTGGGTGTCCTGTGCTGCCTCAGTGGGTGGTGTGGGGGCGGGGCTGACCTCCCCCGCGCCTGGCTCAGTGCAGCAGACCCTGGCCCCTGTGCCCGCTCTCTGCCCTGAGCAGGAGTTTGATTTTCCTACCCCGTGGTGAAGCAAGCACAGGTGGGCGGAGGTGGGCAGCGGTTTCCAGCCCCAGCCACCGGGGCAGGGAGGCCTCTGTTGCTCAGGGCAAGGGAGGCAGGGGGCTTAGTGGGACGAAGGCTCACCCCACACTCTTATCATTAGCATTATCTGTATTTTTAATTTTTAAGTTGAGAAATTTTCTACAACTGTCAAACTAGACAAATGACAGTATCCAGTTCCCCTCACCCAGACGCAGCCATTGCTGACAGCTGTCAGTGTTGAAGATGGCCAGCATCTCATGCCCTTGGTTTCACTCGTTCCCTGGGTGGCCCTCGTCCCCCTCCCCACGTCCTGCGCCCCGCATACCCTGAGCAGCCATGGCCAGGAACTTGGCACGTGGGTTTGTTTTTTCTGAATCTGCATGTGCGCAGCCATGAGCATGAGGTCACTTTTTGAATGTGACCGAAGCTGCATCCTGCTGCGTGTATTGCTGTGTGGCTGGCTTTCCTCCCTGTCTTCTGTTCAGGAATACTGTTCAGGCTGAATACCGTCCTGTGACATGGGTTTAAAAACACAGGCCAGGCATGGTGTCTCACGCCTGGAATCCCAGCGCTTTGGGAGGCTGAGGTGAGAGGATCGCCTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGACCTGATCTCTACAAAAAATTAAAAAATGAGCCGGGCGTGGTGGTGGCACGTGTCATTGTCCCGGCCACTTGGGAGGCCGAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGGCCGTGGTGAGCCATGATGGCACCACCGTACTCCAGCCTGGGCGACAGAGAGAGACCGTCTCTAAAAAATAAAAAATAAATCAACACATAAACATACGTTCTCCTCCTGAGGGACAGAGCTTGCCCCGGTTGTTCCATGTTGACTGTGCTGCACACAGGCCGCCCCCCTTGCTCTGCCCCTCACTGTATTAAGTCTCTTTGGGCCTCAGTTTCTCCATCTCTAAAGGAGGTCGGGGAGGCCAGGCGGGTGTTGAGTGAGATGAAGAGGCCCTTGGAGTCATTCCAGGAGTCTATAGGTGACTCCAGTCTCTTCTCACTTCTGACAGCCTGGTGGCGGGGGTGGAGTCTCTGCTGGGGATGTGGGTACAGGGCTGTGGTGGGCGGGGATGAGGGTGGGGTTTGGTGACAGGGCGTGGGTGGTCACCCAGCTTTGCCTTTCTCCACAG
Seq C2 exon
GGTCCTGAGGACACCGTGAGCCAGCCAGGCCTGGCCGCTGGGCCTGACCGGCCCCCCAGCCCCTACACCCCGCTTCTCCCGGACTCTCCCAGCGGACAGCCCCCCAGCCCCACAGCCTGAGCCTCCCAGCTGCCATGTGCCTGTTGCACACCTGCACACACGCCCTGGCACACATACACACATGCGTGCAGGCTTGTGCAGACACTCAGGGATGGAGCTGCTGCTGAAGGGACTTGTAGGGAGAGGCTCGTCAACAAGCACTGTTCTGGAACCTTCTCTCCACGTGGCCCACAGGCCTGACCACAGGGGCTGTGGGTCCTGCGTCCCCTTCCTCGGGTGAGCCTGGCCTGTCCCGTTCAGCCGTTGGGCCCAGGCTTCCTCCCCTCCAAGGTGAAACACTGCAGTCCCGGTGTGGTGGCTCCCCATGCAGGACGGGCCAGGCTGGGAGTGCCGCCTTCCTGTGCCAAATTCAGTGGGGACTCAGTGCCCAGGCCCTGGCCACGAGCTTTGGCCTTGGTCTACCTGCCAGGCCAGGCAAAGCGCCTTTACACAGGCCTCGGAAAACAATGGAGTGAGCACAAGATGCCCTGTGCAGCTGCCCGAGGGTCTCCGCCCACCCCGGCCGGACTTTGATCCCCCCGAAGTCTTCACAGGCACTGCATCGGGTTGTCTGGCGCCCTTTTCCTCCAGCCTAAACTGACATCATCCTATGGACTGAGCCGGCCACTCTCTGGCCGAAGTGGCCGCAGGCTGTGCCCCCGAGCTGCCCCCACCCCCTCACAGGGTCCCTCAGATTATAGGTGCCCAGGCTGAGGTGAAGAGGCCTGGGGGCCCTGCCTTCCGGGCGCTCCTGGACCCTGGGGCAAACCTGTGACCCTTTTCTACTGGAATAGAAATGAGTTTTATCATCTTTGAAAAATAATTCACTCTTGAAGTAATAAACGTTTAAAAAAATGGGATGCCTGCCTCTGTGACAGCCTTGTTTGCTGAGGTCGTGGGGGTGGGGGCCTCTGGGAAGTTCCGGGCTCCTCTTCTCTTGGTCAATAGCTCCTTTCTGGTGGCTGCCAAGAGCGTCTCTCCCAGGGCCGGGCTGCTGGCTTACCTTCCTGTTGTTTTCAAATTTCAACCTTGTGCAATGTTGAGTTTCATAGAAATACTGCATGAGTACGCCCTTGTTTAGAAGCAGCAGGGTCTGAGTCCCATCCCACAGCCCCCAGTGCAGACGCTTTTGCCACTTTTGCATGGGGCCCCCTGGATGTGTTTCTGTGCATTTATCTACAAATCCTGGTGCCCATAGGACATGCCCCGTGTTGTTCTAGGCCTTTGCTTTCTGCTCGTTACATAAATGGTGAAGAAGAGAAGCGGGTAAGAGAACAGATTGGAGCCATCTAAAAGTTCTCATCTTAAGTGTAGATCATTGCAAAGGATGGAATTTTCTCCGATTGTCATCATCGTTGATGTTTGAATATGAGACCATTTCATCAGTATTTAAGTGTGCCCGCTGGGATCTAACTAGGAGAGGAGAGGGTATTCACTGCCGAACATTTCAAAGAATATACGAACAAGCTCTTTTATGGTCAGAAATGTTAGCCCTTTTCCCCTTAAACTTGTATTTCCTTTCTTCTTCCCTCCTAAAATTTTATCTAAATGATATTTATATTTGATGCTTTTAAGCCTTTTATTAATCACTCCTATACTTGCCTGCAACATAAATATATAAGTTGAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073060:ENST00000339570:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(10.2=93.9)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development