HsaINT0145437 @ hg19
Intron Retention
Gene
ENSG00000073060 | SCARB1
Description
scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:1664]
Coordinates
chr12:125262174-125271049:-
Coord C1 exon
chr12:125270903-125271049
Coord A exon
chr12:125263133-125270902
Coord C2 exon
chr12:125262174-125263132
Length
7770 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
AGCTTTGCCTTTCTCCACAGGGT
3' ss Score
11.12
Exon sequences
Seq C1 exon
AGCGGGGCCATGGAGGGGGAGACTCTTCACACATTCTACACTCAGCTGGTGTTGATGCCCAAGGTGATGCACTATGCCCAGTACGTCCTCCTGGCGCTGGGCTGCGTCCTGCTGCTGGTCCCTGTCATCTGCCAAATCCGGAGCCAA
Seq A exon
GTAGGTGCTGGCCAGAGGGCAGCCCGGGCTGACAGCCATTCGCTTGCCTGCTGGGGGAAAGGGGCCTCAGATCGGACCCTCTGGCCAACCGCAGCCTGGAGCCCACCTCCAGCAGCAGTCCTGCGTCTCTGCCGGAGTGGGAGCGGTCACTGCTGGGGGCTGCGCAGCACGCTTGCGTCTTTTGCATGCCGCGTTGCCACTACTCTGCCTGTTCTGGAAGGCCTGGGACCCTCCCTTGGAGGGGGCACAGGTGGGCTTTGAGTAATGAGACCTGGTACTTGCATCATCCATTCATCAAGTCAGCACCCGGGGATGCCAGGTTCTGTTAGGGGCGAGGGGACGTACAGCAGTAGAGGAGACAGCTGAGATCCCTGCTCAGGGGGATTGAGGGGGGCTGGCATCCCAGCCGGGGAGACAGATGAAAACCAAGTAAATCAGCAGAAAAGATAATTTCACTCATGATAGGAGCTGTGAGGGGTTAGAGCCAAATAGAAATACAGCGTGAGCCACGTGTGAGGTTTTCAGTTTAAATTTTCTAATAGCCACTTAACAGTCAAAGGAAACAGGTGGAATTAATTTTAATCTTATTTAACCCAAATATATGCAAAGTATTATCACTTCAACATGTAATCAGTATAAACGGCATCAATATTTTTGCAGTGTTTTTGCATGAAGTCTTTGAAATCCTGTGTGTACGATACATGTGCAGCAGGTCTCATTTTGGACTGGCCCCGTTTCAAGGGCTCACCAACTGAATGCAGCTTCCAGACTGGAGAGTGCATGTCTGGAGCAAGTGGGGACAAGGACAGATGGAGCTTCAGGAAGGCCTCTCTGAAGAGGTAGATAGTGAGCTTTGACATGGAGGCCAGGGAGGCACTCAGCACACAGCCACATGAGGAATGCTGCCTGGAGCGGCCACTGCAAAGGCCCTGTGGCAGGGACAGGCAAGGCACATTGGACGGTCAGGTAGGGCCAGGGTGGCTGGAGGGGAGTGAGGGCAGGGACAGAGGTAGGAGGTGGTGTCTGAGAGTGGACAGGGCGGGCCACCCAGGGCCTCGTGGTGCACAGTGAGCAGTTTGGAACTGATTCTGGGAGTGACAGAGGCATTGGAGGCTTTTAAAGAGGGGAATCACTAGGTCAGCTGCTGGCTGGGGAATGGGCCCCGGGCTGGGAGGGGTGGAAGCCTGGGCCCAGCGGGGAGGCCCCAGTGCGTGAGGAAGTCGATGGCTTGAACAGGATGGGGCAGCTGCTATCAGGAGGGAACGGAAGTGGGGAAGAGCTCCAGCCCTGGGCTTCAGACCTCCAGAAGCAGCAGGAAGAGGGGTGATAACAGTGTCCCTCCTTGCTTCGGGGTCATTTATTTATTCATTCATGCATTCACTGCAAGGCCCTTTGCACAGGTCAGGGGATGCAGATGACCAGAACATAAGATCTGCAGCAAAGATGGGCAAGGCAGGCCTTTAGGCAAGTTACTACAGTCACACGAAGGACAGGAGAGCTGTGATCACAGAGCTCAAGGGGCAGTGGAGATGGGCGAGTGGCTGCCATGGCAGGGGAAGGGATGCTGCCCACTGGCAGGTCATCAGGAAAGGCTGTTTTTGGATGCATGGACCAGAAAGCCACTCTCTGAGGTGGCCCCCACCTGCATCATCCTAGGGCCACAGGCCGAGGCCTTCTGAGGGGCCTTGGGGCTGCCCCGCTGCTCTGCTGGTCTTGGCTCCTCTGCAGCACCTGCTTCCTTTAGCACTGGTGAATGATTCTTCCTCTTCCCCTGTCTCAGGGAAGGCTTGCCTGCTTCCATGCTTGCATGCTGGGTGACAATAAAGCATTCCTGGTTCTTCACCTTGGCTTTCAGACCTGAAACCCGACTTCCTTTCAAAATTCCTGTCCTCGGGGGGAAAAGGTTTCCACAATGTGAGATGGTAGCCTGGACACCAGCTGTCATCATGTTGCTGCTCTAGCGTTTGAGCTCCCGATGAACAATGACCATTGGGTCCAACCAGCCCTTTTGGGAGCCCCCTTCTCTGTTACTGCCCCAGGGGGAGCCAGAACCCAGCAGGGCTGTGACTCCAGCGAGCAAAATGGAACTCCCTCCAGTTTCTAGACTGAATTATGTAGGGAGGACAGAAGGACTCAGAACCCACACTCCCAGACCATGAATACCTTCCCGTGGCAGAGCATCACCATAGGTGTCCACAAGTGACGACGCACAGCCACATGAGGGGGTCCCTGGGGACTGGCTGAGGGACTGGGCCAGAGGAGGCCATGACAGCCTCATCCCTCTGTCTCCTTCTGTCTGTCTCCAAATTGTCCACCAGAATGGGGACAGGGAAGGAGGGTCAGGAAGCACAGAAGGTCTAGGCTGTGGCTAGGGTCCCTTTCCCTGCCGCAGCCCCCAAATCAGCATCCCACCCTCAAATCCAGTAAGAATGCTACGATCGGCAGTGTGGCTCCCTCCCTGCAGGTTTCACTGGAGGCCACGTAAGTGAAATTTATCCCATTATGTGTGTTTTGATGTAGCAGGACCTTACCAGTTTTTTTTGTTTTTTTATTTTTATTTTTTTTGGTTTCTTTTTTGAGATGGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGGGAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCCGAGCAGTTGGGATTACAGGCACCTGCCACCATGCCTGGCTAATTTTTGTATATTGAGTAGAGGCGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCTGCCGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCGGCCTTATCAGTTTTTATGTAATTTGTCCTGATTTAAAAAAAAAAAATCACATGCGGGTAAACTCAACATATTTTAATTTCTCTTTAGAGAAATTTTCCACTTGAGCCAGGTATGGTGGCTCTTGCCTGTAATCTGAGCTACTCGGGAGGTTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCCATGATCGCACCATTGCACTCCAGCCTGGACAACAGAGTGAGATCCTGTCTCAAAAATTAAAAAAAGCAGTAATTTTTTCTTCTCAAGTCATTCTTTTAAAATAAATCAAAAGTATTTTAACAGAACAATCTGTTCCTCGTTGATTTTAAACAGCCCCCCAGCTAAGTCCACTGGTTGTCGGTCTCCATGGCCCATCTCCCCACCTTGCTTCCTCGCTGGCTTAAATTTTCAAGTGGACGAGCCCTTTTCAGCTTGGCTTGTCCACCTCCCAGGTGTGTTTCCTGAAGATGCTTGTACTTATGTCTAAGAGCGGCAGCTCCCCACATCTCAGCCACCTGCAATCGTTGAGGGTTGTTGGACTCTAAACTTATGTGCCTTTCCTGTTTCCTCTTTGCCTTTTGCAAATTGAAGAACCGTGTAAAACCATTTTTATGTGGCTTCAACGTCAACTATAAATTAGCTTGGTTATCTTCTAGGAGAAATGCTATTTATTTTGGAGTAGTAGTAAAAAGGGCTCAAAGGATAAGGAGGCCATTCAGGCCTATTCTGAATCCCTGATGACATCAGCTCCCAAGGGCTCTGTGCTGCAGGAAGCAAAACTGTAGGTGGGTACCAGGTAATGCCGTGCGCCTCCCCGCCCCCTCCCATATCAAGTAGAATGCTGGCGGCTTAAAACATTTGGGGTCCTGCTCATTCCTTCAGCCTCAACTTCACCTGGAGTGTCTACAGACTGAAGATGCATATTTGTGTATTTTGCTTTTGGAGAAACTGCCCTTCCTATGTTCTGAGTGAATAGCAGTTTTTTTGATCCCAGAGGGCAACTTGTATTCTGTGGGCTGGTGCCTATTTGCAAGGTCACATTAGAAAGACAGGAGCAAGGCTTAGGCCTGCTGCTTCTGGAATCTCTTGTGCAATAGACTCCCCTGGGGAAGTCTGCTAGAAATGCAGATCCCTGGGCAGCCTTCTAGCCTTCTGGAATAGGATCATGGTGGGACCCTGGAATCTGTATTTTAATGGACCCTAATGAGATTCTGATGTAGAAACATGTTTGAGAGGCATTGATCTAAATCTGGGATGACTGGCCAGGTGCGGTGGCTCACACCTGTAATCCAGCACTTTGGGAGGCCGAAGCAGGTGGATCATTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAACCTGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGTGTGGTGGCACACGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGATGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAATAAAACTAAAATAAATAAATAAATAAATACATCTGGGATGACTGACCAAGAACAAAGAATGTAGGCATCAACTGAACACCAACTGTATACCTGGGACTGGATCTGAGGGTAGGATTGCCAGATTGAGCACAAACAAACAAACGAAACACAAGAAACAACAGAAGGGTGCCTGTTAAATATGAATTTCTGGTAAGCAATAAGTAATTTTTATTGTGTTCCTGTGCAATGATAGGACGCACGTATCCTGAAAACCTGTCTGTAGTTCACCTGAAATTCACATTTAACTAGGCGTTCTGATTTTATGTGGCCGCCCTATCTGCTGGGAACATAGGCTGATGCCCCTGGGGGTTCTGCGTTTCCTTGGCCAGGTTCCTGTAGGGCTGAGGTCATGGGGGAGCCGTGGCCAGGGATGGTGTCCTTGCCAGGGGAGGTGACGGGCAGAGCTGCAGGCCCTACAACTTGGGGTTGGGCAGGGATGAGTCGCTCTACCGTGGTGCCTCTGATAATAGCTGTTATTTTAGTTTCTGAAAAATGTGCTGCCCTCAAGAGCTTCTGAGGCTAGGCCTACTTGGGTGAAAATAGCTTTCCAGGGAGCCACATTGTGGGGACGTGAGGCAGCAGCCCCACTCTTTGGGGCCACTTGGCTGTCTCTAACTCATCTCACTTGCCAGGGCTGGACAAGGAGATGAAAAAGAAAATGCCAAGGGGTGGGCAGGCAGGAGCCTGTTGGCGTTGGCAGGCGCTGCCAGCCCTGTGTCCCAGTCAAGCTCTGGGGCGCCCTTCCTGTCCATCTGGGAGTAGGGGGTGGAGTCTGACCATGTTGGGGTGGAGTGTTAATATTAGGAGAGGATCCTCCCTGGGACAGGGTCCCCAGGCTTGGGGGCAAGGCCTTCTGCCTGGACCCCCTTCCTTTCCTCTCTCCCAGGATTCCTCCAGGACACCGTAGTGCTGTGCACGGTTTGGCCCCATCGGTGTGCCTGCTCCTTCCAGCCACTGCTCCCTTCTGCAGAAACTTGCCTGGGATTCCCAGGGTGCAGGGGTGGGGGCTGGTCAGGGGCTGGTCAGGGCCTGGTCAGTGTAGAGCAGGGAGCTTTTCACTTTTAGCATAGATAGAGTGGCCAGGGCCCCATGGCTGCACCTCCCTGGACATAACCAGGATGTCCTGTCATCTGCCCCCCAAACAAAACTGGGGTCTCCCCTTTATTTTGCCAACAGAATCCAATTTTTAGGTGATGAGACAAGTGTTTGACTTGAAAAGACCCTCCTGCCCTGCCTCCTGGAAGGTCTGGAGCCCAGCCCAGCGCCCCGGATCCCCTAGGCATGTGAAACGGGGAATGCAGTGTCCTCCAGTGGCTGGCTGCAGCTTGGGGTGGGCACCTGGGTGGTGGCTGGTGGTCCCCCTGCAGGCCACTGCTGCCCCCTCTTGGGTCCTGTTCTGAGTCTCAGGCCTGAGTCCCTGGGGAAGGCCCCACACCTTTGCCCTGTACCTGGGTATGGGGATGGCCCTGAGGGGCTGCCTTGCTTGGGAGAAGGGGGGAAAACAGATATTTTTATATAAATAAGAAAAAGACAGCCCCTCTGGGCAGATGAGGCCTGCTGTAGGGCAGGGGGCTTGGTAAACTGTGTGTCCACTGGTCTGTAACCCTTCAGCTGGGTCCTTTTGTGCAGTGAACAGCCTGGACAACTGTCCAGGTGGCCCTTCAGGGATATGTTCCTGGACCTTTCTTAGCTTCTCACCGATCTTTCTTCCACGCCAAGTCCATGTTCCTCAGTCAAACAAGTGGCAAAGAGGAGGAGGAGGAGGGGAAGGAGGAGGAACCTGCTTCACCCTCTGGCACCTGCGGGTTTTGTTCCACGTGTCTTCCTTGGGAAAGACAAGGGGTTCTTTTACAGCCTAGGGGTGGTTTCCCCTTTCTACTTCTGAGTGAGACCTTCTCAAGTCACGGCTCTTTGGGCCCACATGGCTAAGGTCTAGCCACCTGTGGGTGTCCTGTGCTGCCTCAGTGGGTGGTGTGGGGGCGGGGCTGACCTCCCCCGCGCCTGGCTCAGTGCAGCAGACCCTGGCCCCTGTGCCCGCTCTCTGCCCTGAGCAGGAGTTTGATTTTCCTACCCCGTGGTGAAGCAAGCACAGGTGGGCGGAGGTGGGCAGCGGTTTCCAGCCCCAGCCACCGGGGCAGGGAGGCCTCTGTTGCTCAGGGCAAGGGAGGCAGGGGGCTTAGTGGGACGAAGGCTCACCCCACACTCTTATCATTAGCATTATCTGTATTTTTAATTTTTAAGTTGAGAAATTTTCTACAACTGTCAAACTAGACAAATGACAGTATCCAGTTCCCCTCACCCAGACGCAGCCATTGCTGACAGCTGTCAGTGTTGAAGATGGCCAGCATCTCATGCCCTTGGTTTCACTCGTTCCCTGGGTGGCCCTCGTCCCCCTCCCCACGTCCTGCGCCCCGCATACCCTGAGCAGCCATGGCCAGGAACTTGGCACGTGGGTTTGTTTTTTCTGAATCTGCATGTGCGCAGCCATGAGCATGAGGTCACTTTTTGAATGTGACCGAAGCTGCATCCTGCTGCGTGTATTGCTGTGTGGCTGGCTTTCCTCCCTGTCTTCTGTTCAGGAATACTGTTCAGGCTGAATACCGTCCTGTGACATGGGTTTAAAAACACAGGCCAGGCATGGTGTCTCACGCCTGGAATCCCAGCGCTTTGGGAGGCTGAGGTGAGAGGATCGCCTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGACCTGATCTCTACAAAAAATTAAAAAATGAGCCGGGCGTGGTGGTGGCACGTGTCATTGTCCCGGCCACTTGGGAGGCCGAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGGCCGTGGTGAGCCATGATGGCACCACCGTACTCCAGCCTGGGCGACAGAGAGAGACCGTCTCTAAAAAATAAAAAATAAATCAACACATAAACATACGTTCTCCTCCTGAGGGACAGAGCTTGCCCCGGTTGTTCCATGTTGACTGTGCTGCACACAGGCCGCCCCCCTTGCTCTGCCCCTCACTGTATTAAGTCTCTTTGGGCCTCAGTTTCTCCATCTCTAAAGGAGGTCGGGGAGGCCAGGCGGGTGTTGAGTGAGATGAAGAGGCCCTTGGAGTCATTCCAGGAGTCTATAGGTGACTCCAGTCTCTTCTCACTTCTGACAGCCTGGTGGCGGGGGTGGAGTCTCTGCTGGGGATGTGGGTACAGGGCTGTGGTGGGCGGGGATGAGGGTGGGGTTTGGTGACAGGGCGTGGGTGGTCACCCAGCTTTGCCTTTCTCCACAG
Seq C2 exon
GGTCCTGAGGACACCGTGAGCCAGCCAGGCCTGGCCGCTGGGCCTGACCGGCCCCCCAGCCCCTACACCCCGCTTCTCCCGGACTCTCCCAGCGGACAGCCCCCCAGCCCCACAGCCTGAGCCTCCCAGCTGCCATGTGCCTGTTGCACACCTGCACACACGCCCTGGCACACATACACACATGCGTGCAGGCTTGTGCAGACACTCAGGGATGGAGCTGCTGCTGAAGGGACTTGTAGGGAGAGGCTCGTCAACAAGCACTGTTCTGGAACCTTCTCTCCACGTGGCCCACAGGCCTGACCACAGGGGCTGTGGGTCCTGCGTCCCCTTCCTCGGGTGAGCCTGGCCTGTCCCGTTCAGCCGTTGGGCCCAGGCTTCCTCCCCTCCAAGGTGAAACACTGCAGTCCCGGTGTGGTGGCTCCCCATGCAGGACGGGCCAGGCTGGGAGTGCCGCCTTCCTGTGCCAAATTCAGTGGGGACTCAGTGCCCAGGCCCTGGCCACGAGCTTTGGCCTTGGTCTACCTGCCAGGCCAGGCAAAGCGCCTTTACACAGGCCTCGGAAAACAATGGAGTGAGCACAAGATGCCCTGTGCAGCTGCCCGAGGGTCTCCGCCCACCCCGGCCGGACTTTGATCCCCCCGAAGTCTTCACAGGCACTGCATCGGGTTGTCTGGCGCCCTTTTCCTCCAGCCTAAACTGACATCATCCTATGGACTGAGCCGGCCACTCTCTGGCCGAAGTGGCCGCAGGCTGTGCCCCCGAGCTGCCCCCACCCCCTCACAGGGTCCCTCAGATTATAGGTGCCCAGGCTGAGGTGAAGAGGCCTGGGGGCCCTGCCTTCCGGGCGCTCCTGGACCCTGGGGCAAACCTGTGACCCTTTTCTACTGGAATAGAAATGAGTTTTATCATCTTTGAAAAATAATTCACTCTTGAAGTAATAAACGTTTAAAAAAATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073060-SCARB1:NM_001082959:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(10.2=93.9)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)