RnoINT0132705 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82357816-82358863:+
Coord C1 exon
chr13:82357816-82358004
Coord A exon
chr13:82358005-82358677
Coord C2 exon
chr13:82358678-82358863
Length
673 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACT
5' ss Score
6.06
3' ss Seq
CTTCTCTTTCATCTCCTCAGTGG
3' ss Score
9.37
Exon sequences
Seq C1 exon
TTGTGACCTGCCAAGAACAGGAATACCCTGACCATGGAAGCCTGAACTGCACCCACCCATTCGGCCTCTTCAGCTATAATTCATCCTGCTCCTTCAGCTGTGAAAGGGGCTATGTGCCCAGCAGCATGGAGACCACAGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCACCTGCTCCTGCCTGCCATG
Seq A exon
GTAACTCTCCCAATGCATCAAACCTTTCCACTGCTCCTCATTGCCTTAGATTTTATCCAACTTGTAACTTTCCCCAATTCTGTGGAAGATGTGTTCTTCTCTCTCTGGTACCAGTTTGGTTTAGCATAGGATTTCTTTTCCACTTTTTTTTTTTGAAAATAGGTATTTCTGAGATTCTGGTGACATGTAAAGGAAGGGGTCTAGACAGTGGAAGCATGTCTAGACAGCCTCATAACTTTCTCATGGACTTTCCTGTTTGGCTCTCCCATGCAATGGGACCTTGTTTAGTTCTGAATTGATCACGAAGCTTCTCTTTGCACAACAATTTAGTACTCTGGAGCAATTGAAAAGTTCACTGCTTAAGTCCTTTGTATGTTAATATTGCCTTTACACCACGTCATGGATCTTGATCTAGAGGCTGTTGTTTTCTTTGTTTTTCTTGTTTCCATGTGTAGTAAAATAGATCAGAGGCCAGCCAGCATAGTTAAAGTGAATAGTAAAGACTAAAGCATCCATTATGAGTCTGCATGTTATCAAGAAATTGGCACAGGGGTTTGGGCTATGCCCTTTGAAGATGGGTTTCACCTTCTTTGATAAACCCTAATTCAAGAGAAAATGAAAACATCTGTAATTTTCTTTGAGTAAAGCTCTCTCTTCTCTTTCATCTCCTCAG
Seq C2 exon
TGGTTGAATGTAAAGCTTTGACCCAACCTGCCCACGGAGTCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAATACAACGTGCACGTTTGATTGTGAGGAAGGGTACAGGAGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCCGGTGTCTGGGACAACGAGAAGCCATCGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCATGGAAGCCTGAAC
R:
TTTGCACGATGGCTTCTCGTT
Band lengths:
348-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]