RnoINT0132903 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7306220-7306553:+
Coord C1 exon
chr16:7306220-7306380
Coord A exon
chr16:7306381-7306490
Coord C2 exon
chr16:7306491-7306553
Length
110 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCTTGCTGGCTGTGTTTCAGGTC
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATCTCCTGACTACCAACCGCTCTGCCATCTTTCTGGGTCCACGGGGCTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGGGACCGCCTCTTTCTGGGAGGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGATCCCCGGGAG
Seq A exon
GTGAGCCGGACTAAGGTGGTGAAAGTAGGCACTTTCAGGTGGAGAACAGATGGCGAGACTTGAGACCATGAGTTTAAGGACGTTGAGATTGCTTGCTGGCTGTGTTTCAG
Seq C2 exon
GTCTTGTGGCCGCCGCAGCCCGGACAGAAGGTGGAATGTGTCCGAAAGGGAAAAGACCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
NA
C2:
PF0140314=Sema=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGACTACCAACCGCTC
R:
GGGTCTTTTCCCTTTCGGACA
Band lengths:
219-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]